Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28965

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28960 and BPHYT_RS28965 are separated by 34 nucleotidesBPHYT_RS28965 and BPHYT_RS28970 are separated by 320 nucleotidesBPHYT_RS28970 and BPHYT_RS28975 are separated by 189 nucleotides BPHYT_RS28960: BPHYT_RS28960 - histidine kinase, at 2,052,974 to 2,055,637 _RS28960 BPHYT_RS28965: BPHYT_RS28965 - hypothetical protein, at 2,055,672 to 2,056,592 _RS28965 BPHYT_RS28970: BPHYT_RS28970 - hypothetical protein, at 2,056,913 to 2,057,242 _RS28970 BPHYT_RS28975: BPHYT_RS28975 - transcriptional regulator, at 2,057,432 to 2,058,340 _RS28975 Position (kb) 2055 2056 2057Strain fitness (log2 ratio) -1 0 1at 2054.973 kb on - strand, within BPHYT_RS28960at 2055.019 kb on + strand, within BPHYT_RS28960at 2055.020 kb on - strand, within BPHYT_RS28960at 2056.425 kb on + strand, within BPHYT_RS28965at 2056.433 kb on + strand, within BPHYT_RS28965at 2056.733 kb on + strandat 2057.249 kb on - strandat 2057.253 kb on + strandat 2057.261 kb on - strandat 2057.392 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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2,054,973 - BPHYT_RS28960 0.75 +0.7
2,055,019 + BPHYT_RS28960 0.77 +0.1
2,055,020 - BPHYT_RS28960 0.77 -0.5
2,056,425 + BPHYT_RS28965 0.82 -0.3
2,056,433 + BPHYT_RS28965 0.83 -0.8
2,056,733 + +1.2
2,057,249 - -0.1
2,057,253 + -0.9
2,057,261 - -0.8
2,057,392 - +0.2

Or see this region's nucleotide sequence