Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26550

Experiment: LB, 23C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS26545 and BPHYT_RS26550 are separated by 441 nucleotidesBPHYT_RS26550 and BPHYT_RS26555 are separated by 269 nucleotides BPHYT_RS26545: BPHYT_RS26545 - hypothetical protein, at 1,524,003 to 1,524,962 _RS26545 BPHYT_RS26550: BPHYT_RS26550 - Fis family transcriptional regulator, at 1,525,404 to 1,526,768 _RS26550 BPHYT_RS26555: BPHYT_RS26555 - multidrug MFS transporter, at 1,527,038 to 1,528,201 _RS26555 Position (kb) 1525 1526 1527Strain fitness (log2 ratio) -1 0 1at 1525.280 kb on - strandat 1525.310 kb on + strandat 1525.310 kb on + strandat 1526.123 kb on - strand, within BPHYT_RS26550at 1526.732 kb on - strandat 1527.585 kb on + strand, within BPHYT_RS26555at 1527.700 kb on - strand, within BPHYT_RS26555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
remove
1,525,280 - +0.0
1,525,310 + -0.6
1,525,310 + -0.6
1,526,123 - BPHYT_RS26550 0.53 -0.9
1,526,732 - -0.6
1,527,585 + BPHYT_RS26555 0.47 -0.1
1,527,700 - BPHYT_RS26555 0.57 -0.5

Or see this region's nucleotide sequence