Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25030 and BPHYT_RS25035 are separated by 86 nucleotides BPHYT_RS25035 and BPHYT_RS25040 are separated by 197 nucleotides BPHYT_RS25040 and BPHYT_RS25045 are separated by 133 nucleotides
BPHYT_RS25030: BPHYT_RS25030 - gluconate 2-dehydrogenase, at 1,185,696 to 1,186,469
_RS25030
BPHYT_RS25035: BPHYT_RS25035 - long-chain fatty acid--CoA ligase, at 1,186,556 to 1,188,253
_RS25035
BPHYT_RS25040: BPHYT_RS25040 - hypothetical protein, at 1,188,451 to 1,188,741
_RS25040
BPHYT_RS25045: BPHYT_RS25045 - LysR family transcriptional regulator, at 1,188,875 to 1,189,786
_RS25045
Position (kb)
1186
1187
1188
1189 Strain fitness (log2 ratio)
-1
0
1
2 at 1185.564 kb on - strand at 1185.633 kb on - strand at 1185.633 kb on - strand at 1185.965 kb on + strand, within BPHYT_RS25030 at 1186.186 kb on - strand, within BPHYT_RS25030 at 1186.344 kb on - strand, within BPHYT_RS25030 at 1186.486 kb on - strand at 1186.631 kb on + strand at 1186.792 kb on + strand, within BPHYT_RS25035 at 1186.823 kb on + strand, within BPHYT_RS25035 at 1187.015 kb on + strand, within BPHYT_RS25035 at 1187.015 kb on + strand, within BPHYT_RS25035 at 1187.413 kb on - strand, within BPHYT_RS25035 at 1187.499 kb on - strand, within BPHYT_RS25035 at 1187.592 kb on - strand, within BPHYT_RS25035 at 1188.330 kb on + strand at 1188.331 kb on - strand at 1188.960 kb on + strand at 1189.024 kb on - strand, within BPHYT_RS25045 at 1189.024 kb on - strand, within BPHYT_RS25045
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 1,185,564 - +0.1 1,185,633 - +0.2 1,185,633 - -0.4 1,185,965 + BPHYT_RS25030 0.35 +0.1 1,186,186 - BPHYT_RS25030 0.63 +0.5 1,186,344 - BPHYT_RS25030 0.84 -0.1 1,186,486 - -0.2 1,186,631 + +1.9 1,186,792 + BPHYT_RS25035 0.14 +0.3 1,186,823 + BPHYT_RS25035 0.16 +1.2 1,187,015 + BPHYT_RS25035 0.27 +0.4 1,187,015 + BPHYT_RS25035 0.27 +1.6 1,187,413 - BPHYT_RS25035 0.50 +0.3 1,187,499 - BPHYT_RS25035 0.56 +0.4 1,187,592 - BPHYT_RS25035 0.61 -0.0 1,188,330 + -0.3 1,188,331 - +0.0 1,188,960 + +0.0 1,189,024 - BPHYT_RS25045 0.16 +0.1 1,189,024 - BPHYT_RS25045 0.16 +0.3
Or see this region's nucleotide sequence