Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24540

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24530 and BPHYT_RS24535 are separated by 27 nucleotidesBPHYT_RS24535 and BPHYT_RS24540 are separated by 19 nucleotidesBPHYT_RS24540 and BPHYT_RS24545 are separated by 152 nucleotides BPHYT_RS24530: BPHYT_RS24530 - formate dehydrogenase, at 1,070,688 to 1,073,612 _RS24530 BPHYT_RS24535: BPHYT_RS24535 - ferredoxin, at 1,073,640 to 1,074,395 _RS24535 BPHYT_RS24540: BPHYT_RS24540 - DMSO reductase, at 1,074,415 to 1,075,365 _RS24540 BPHYT_RS24545: BPHYT_RS24545 - ribonucleoside-diphosphate reductase, at 1,075,518 to 1,078,103 _RS24545 Position (kb) 1074 1075 1076Strain fitness (log2 ratio) -1 0 1at 1073.611 kb on - strandat 1074.545 kb on - strand, within BPHYT_RS24540at 1074.545 kb on - strand, within BPHYT_RS24540at 1074.573 kb on - strand, within BPHYT_RS24540at 1074.715 kb on + strand, within BPHYT_RS24540at 1075.424 kb on - strandat 1075.455 kb on - strandat 1075.622 kb on + strandat 1075.622 kb on + strandat 1075.622 kb on + strandat 1076.122 kb on + strand, within BPHYT_RS24545at 1076.302 kb on + strand, within BPHYT_RS24545at 1076.303 kb on - strand, within BPHYT_RS24545

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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1,073,611 - +0.3
1,074,545 - BPHYT_RS24540 0.14 -0.8
1,074,545 - BPHYT_RS24540 0.14 -1.0
1,074,573 - BPHYT_RS24540 0.17 -1.3
1,074,715 + BPHYT_RS24540 0.32 -0.3
1,075,424 - +1.0
1,075,455 - +0.7
1,075,622 + +0.8
1,075,622 + -0.2
1,075,622 + -0.3
1,076,122 + BPHYT_RS24545 0.23 +0.5
1,076,302 + BPHYT_RS24545 0.30 -0.2
1,076,303 - BPHYT_RS24545 0.30 -1.0

Or see this region's nucleotide sequence