Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23595 and BPHYT_RS23600 are separated by 250 nucleotides BPHYT_RS23600 and BPHYT_RS23605 are separated by 73 nucleotides BPHYT_RS23605 and BPHYT_RS23610 are separated by 45 nucleotides BPHYT_RS23610 and BPHYT_RS23615 overlap by 4 nucleotides BPHYT_RS23615 and BPHYT_RS23620 are separated by 67 nucleotides
BPHYT_RS23595: BPHYT_RS23595 - hypothetical protein, at 867,981 to 868,166
_RS23595
BPHYT_RS23600: BPHYT_RS23600 - hypothetical protein, at 868,417 to 868,695
_RS23600
BPHYT_RS23605: BPHYT_RS23605 - hypothetical protein, at 868,769 to 869,050
_RS23605
BPHYT_RS23610: BPHYT_RS23610 - alpha/beta hydrolase, at 869,096 to 870,091
_RS23610
BPHYT_RS23615: BPHYT_RS23615 - XRE family transcriptional regulator, at 870,088 to 870,771
_RS23615
BPHYT_RS23620: BPHYT_RS23620 - hypothetical protein, at 870,839 to 871,030
_RS23620
Position (kb) 869
870
871 Strain fitness (log2 ratio) -2
-1
0
1 at 868.332 kb on + strand at 868.332 kb on + strand at 868.436 kb on + strand at 868.627 kb on + strand, within BPHYT_RS23600 at 868.640 kb on - strand, within BPHYT_RS23600 at 868.642 kb on + strand, within BPHYT_RS23600 at 868.682 kb on - strand at 868.868 kb on + strand, within BPHYT_RS23605 at 868.868 kb on + strand, within BPHYT_RS23605 at 868.868 kb on + strand, within BPHYT_RS23605 at 868.868 kb on + strand, within BPHYT_RS23605 at 868.869 kb on - strand, within BPHYT_RS23605 at 869.097 kb on + strand at 869.172 kb on + strand at 869.172 kb on + strand at 869.173 kb on - strand at 869.303 kb on + strand, within BPHYT_RS23610 at 869.423 kb on - strand, within BPHYT_RS23610 at 869.423 kb on - strand, within BPHYT_RS23610 at 869.890 kb on - strand, within BPHYT_RS23610 at 869.911 kb on + strand, within BPHYT_RS23610 at 870.508 kb on + strand, within BPHYT_RS23615 at 870.508 kb on + strand, within BPHYT_RS23615 at 870.638 kb on + strand, within BPHYT_RS23615 at 870.699 kb on - strand, within BPHYT_RS23615
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 868,332 + +0.5 868,332 + -0.2 868,436 + +0.0 868,627 + BPHYT_RS23600 0.75 +0.1 868,640 - BPHYT_RS23600 0.80 +1.0 868,642 + BPHYT_RS23600 0.81 +0.7 868,682 - +0.0 868,868 + BPHYT_RS23605 0.35 -0.4 868,868 + BPHYT_RS23605 0.35 +0.4 868,868 + BPHYT_RS23605 0.35 +0.2 868,868 + BPHYT_RS23605 0.35 -0.6 868,869 - BPHYT_RS23605 0.35 +1.3 869,097 + +0.2 869,172 + -0.3 869,172 + +0.4 869,173 - +0.1 869,303 + BPHYT_RS23610 0.21 -0.4 869,423 - BPHYT_RS23610 0.33 -2.2 869,423 - BPHYT_RS23610 0.33 +0.9 869,890 - BPHYT_RS23610 0.80 -0.9 869,911 + BPHYT_RS23610 0.82 -1.4 870,508 + BPHYT_RS23615 0.61 +0.7 870,508 + BPHYT_RS23615 0.61 -0.4 870,638 + BPHYT_RS23615 0.80 +0.1 870,699 - BPHYT_RS23615 0.89 +1.4
Or see this region's nucleotide sequence