Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19435

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19425 and BPHYT_RS19430 are separated by 18 nucleotidesBPHYT_RS19430 and BPHYT_RS19435 are separated by 95 nucleotidesBPHYT_RS19435 and BPHYT_RS19440 overlap by 4 nucleotides BPHYT_RS19425: BPHYT_RS19425 - chromosome partitioning protein ParB, at 4,369,905 to 4,370,792 _RS19425 BPHYT_RS19430: BPHYT_RS19430 - cobyric acid synthase CobQ, at 4,370,811 to 4,371,602 _RS19430 BPHYT_RS19435: BPHYT_RS19435 - 16S rRNA methyltransferase, at 4,371,698 to 4,372,381 _RS19435 BPHYT_RS19440: BPHYT_RS19440 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 4,372,378 to 4,374,336 _RS19440 Position (kb) 4371 4372 4373Strain fitness (log2 ratio) -2 -1 0 1at 4371.747 kb on - strandat 4371.921 kb on - strand, within BPHYT_RS19435at 4372.234 kb on - strand, within BPHYT_RS19435at 4372.267 kb on - strand, within BPHYT_RS19435at 4372.267 kb on - strand, within BPHYT_RS19435

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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4,371,747 - -0.1
4,371,921 - BPHYT_RS19435 0.33 -0.4
4,372,234 - BPHYT_RS19435 0.78 +0.0
4,372,267 - BPHYT_RS19435 0.83 -2.1
4,372,267 - BPHYT_RS19435 0.83 -1.1

Or see this region's nucleotide sequence