Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18590

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18585 and BPHYT_RS18590 are separated by 22 nucleotidesBPHYT_RS18590 and BPHYT_RS18595 are separated by 749 nucleotides BPHYT_RS18585: BPHYT_RS18585 - hypothetical protein, at 4,180,631 to 4,181,821 _RS18585 BPHYT_RS18590: BPHYT_RS18590 - hypothetical protein, at 4,181,844 to 4,182,038 _RS18590 BPHYT_RS18595: BPHYT_RS18595 - multifunctional CCA protein, at 4,182,788 to 4,184,020 _RS18595 Position (kb) 4181 4182 4183Strain fitness (log2 ratio) -1 0 1at 4181.813 kb on - strandat 4181.813 kb on - strandat 4181.813 kb on - strandat 4181.813 kb on - strandat 4181.865 kb on - strand, within BPHYT_RS18590at 4182.036 kb on + strandat 4182.036 kb on + strandat 4182.127 kb on - strandat 4182.158 kb on - strandat 4182.158 kb on - strandat 4182.714 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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4,181,813 - -0.6
4,181,813 - -0.1
4,181,813 - +0.1
4,181,813 - -0.5
4,181,865 - BPHYT_RS18590 0.11 -1.4
4,182,036 + +0.5
4,182,036 + -0.1
4,182,127 - +0.8
4,182,158 - -0.7
4,182,158 - -0.8
4,182,714 + +0.7

Or see this region's nucleotide sequence