Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05375 and BPHYT_RS05380 are separated by 152 nucleotides BPHYT_RS05380 and BPHYT_RS05385 are separated by 91 nucleotides BPHYT_RS05385 and BPHYT_RS05390 are separated by 825 nucleotides
BPHYT_RS05375: BPHYT_RS05375 - inorganic pyrophosphatase, at 1,237,067 to 1,237,594
_RS05375
BPHYT_RS05380: BPHYT_RS05380 - transcriptional regulator, at 1,237,747 to 1,238,085
_RS05380
BPHYT_RS05385: BPHYT_RS05385 - short-chain dehydrogenase, at 1,238,177 to 1,238,926
_RS05385
BPHYT_RS05390: BPHYT_RS05390 - isochorismatase, at 1,239,752 to 1,240,399
_RS05390
Position (kb) 1238
1239 Strain fitness (log2 ratio) -1
0
1 at 1238.161 kb on + strand at 1238.195 kb on - strand at 1238.358 kb on + strand, within BPHYT_RS05385 at 1238.396 kb on - strand, within BPHYT_RS05385 at 1238.528 kb on - strand, within BPHYT_RS05385 at 1238.818 kb on - strand, within BPHYT_RS05385 at 1238.818 kb on - strand, within BPHYT_RS05385 at 1238.902 kb on - strand at 1239.100 kb on + strand at 1239.101 kb on - strand at 1239.160 kb on + strand at 1239.213 kb on - strand at 1239.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 1,238,161 + -1.4 1,238,195 - -0.0 1,238,358 + BPHYT_RS05385 0.24 +1.0 1,238,396 - BPHYT_RS05385 0.29 -0.7 1,238,528 - BPHYT_RS05385 0.47 +0.5 1,238,818 - BPHYT_RS05385 0.85 +0.4 1,238,818 - BPHYT_RS05385 0.85 -0.1 1,238,902 - +0.1 1,239,100 + +0.9 1,239,101 - -0.1 1,239,160 + +0.0 1,239,213 - +0.1 1,239,771 - -0.1
Or see this region's nucleotide sequence