Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29405 and AO356_29410 overlap by 4 nucleotides AO356_29410 and AO356_29415 are separated by 88 nucleotides AO356_29415 and AO356_29420 are separated by 135 nucleotides
AO356_29405: AO356_29405 - alpha-ketoglutarate dehydrogenase, at 6,839,902 to 6,842,598
_29405
AO356_29410: AO356_29410 - hypothetical protein, at 6,842,595 to 6,842,975
_29410
AO356_29415: AO356_29415 - transketolase, at 6,843,064 to 6,843,522
_29415
AO356_29420: AO356_29420 - 1-aminocyclopropane-1-carboxylate deaminase, at 6,843,658 to 6,844,674
_29420
Position (kb)
6843
6844 Strain fitness (log2 ratio)
-2
-1
0
1 at 6842.165 kb on + strand, within AO356_29405 at 6842.252 kb on + strand, within AO356_29405 at 6842.397 kb on + strand at 6842.405 kb on + strand at 6842.405 kb on + strand at 6842.406 kb on - strand at 6842.406 kb on - strand at 6842.417 kb on + strand at 6842.417 kb on + strand at 6842.418 kb on - strand at 6842.599 kb on - strand at 6842.955 kb on - strand at 6842.955 kb on - strand at 6843.018 kb on - strand at 6843.380 kb on + strand, within AO356_29415 at 6843.380 kb on + strand, within AO356_29415 at 6843.404 kb on - strand, within AO356_29415 at 6843.404 kb on - strand, within AO356_29415 at 6843.431 kb on + strand, within AO356_29415 at 6843.432 kb on - strand, within AO356_29415 at 6843.432 kb on - strand, within AO356_29415 at 6843.596 kb on + strand at 6843.639 kb on + strand at 6843.684 kb on - strand at 6843.720 kb on - strand at 6843.720 kb on - strand at 6843.853 kb on - strand, within AO356_29420 at 6844.176 kb on - strand, within AO356_29420 at 6844.297 kb on + strand, within AO356_29420 at 6844.297 kb on + strand, within AO356_29420 at 6844.297 kb on + strand, within AO356_29420 at 6844.297 kb on + strand, within AO356_29420 at 6844.506 kb on - strand, within AO356_29420
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 6,842,165 + AO356_29405 0.84 +0.6 6,842,252 + AO356_29405 0.87 +0.7 6,842,397 + +0.1 6,842,405 + +1.1 6,842,405 + +0.6 6,842,406 - -0.0 6,842,406 - +0.6 6,842,417 + -1.5 6,842,417 + -0.5 6,842,418 - +0.2 6,842,599 - -1.2 6,842,955 - +0.2 6,842,955 - +1.3 6,843,018 - +0.4 6,843,380 + AO356_29415 0.69 +0.6 6,843,380 + AO356_29415 0.69 -1.5 6,843,404 - AO356_29415 0.74 +0.3 6,843,404 - AO356_29415 0.74 -1.0 6,843,431 + AO356_29415 0.80 -0.5 6,843,432 - AO356_29415 0.80 -1.6 6,843,432 - AO356_29415 0.80 +0.5 6,843,596 + -0.9 6,843,639 + -0.1 6,843,684 - +0.4 6,843,720 - -0.1 6,843,720 - +0.1 6,843,853 - AO356_29420 0.19 +1.5 6,844,176 - AO356_29420 0.51 +0.7 6,844,297 + AO356_29420 0.63 -1.3 6,844,297 + AO356_29420 0.63 -2.1 6,844,297 + AO356_29420 0.63 -0.3 6,844,297 + AO356_29420 0.63 -1.2 6,844,506 - AO356_29420 0.83 -0.9
Or see this region's nucleotide sequence