Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29410

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29405 and AO356_29410 overlap by 4 nucleotidesAO356_29410 and AO356_29415 are separated by 88 nucleotidesAO356_29415 and AO356_29420 are separated by 135 nucleotides AO356_29405: AO356_29405 - alpha-ketoglutarate dehydrogenase, at 6,839,902 to 6,842,598 _29405 AO356_29410: AO356_29410 - hypothetical protein, at 6,842,595 to 6,842,975 _29410 AO356_29415: AO356_29415 - transketolase, at 6,843,064 to 6,843,522 _29415 AO356_29420: AO356_29420 - 1-aminocyclopropane-1-carboxylate deaminase, at 6,843,658 to 6,844,674 _29420 Position (kb) 6842 6843Strain fitness (log2 ratio) -1 0 1at 6841.651 kb on - strand, within AO356_29405at 6842.037 kb on - strand, within AO356_29405at 6842.165 kb on + strand, within AO356_29405at 6842.252 kb on + strand, within AO356_29405at 6842.397 kb on + strandat 6842.405 kb on + strandat 6842.405 kb on + strandat 6842.406 kb on - strandat 6842.406 kb on - strandat 6842.417 kb on + strandat 6842.417 kb on + strandat 6842.418 kb on - strandat 6842.599 kb on - strandat 6842.955 kb on - strandat 6842.955 kb on - strandat 6843.018 kb on - strandat 6843.380 kb on + strand, within AO356_29415at 6843.380 kb on + strand, within AO356_29415at 6843.404 kb on - strand, within AO356_29415at 6843.404 kb on - strand, within AO356_29415at 6843.431 kb on + strand, within AO356_29415at 6843.432 kb on - strand, within AO356_29415at 6843.432 kb on - strand, within AO356_29415at 6843.596 kb on + strandat 6843.639 kb on + strandat 6843.684 kb on - strandat 6843.720 kb on - strandat 6843.720 kb on - strandat 6843.853 kb on - strand, within AO356_29420

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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6,841,651 - AO356_29405 0.65 -0.4
6,842,037 - AO356_29405 0.79 +0.7
6,842,165 + AO356_29405 0.84 +0.6
6,842,252 + AO356_29405 0.87 +0.7
6,842,397 + +0.1
6,842,405 + +1.1
6,842,405 + +0.6
6,842,406 - -0.0
6,842,406 - +0.6
6,842,417 + -1.5
6,842,417 + -0.5
6,842,418 - +0.2
6,842,599 - -1.2
6,842,955 - +0.2
6,842,955 - +1.3
6,843,018 - +0.4
6,843,380 + AO356_29415 0.69 +0.6
6,843,380 + AO356_29415 0.69 -1.5
6,843,404 - AO356_29415 0.74 +0.3
6,843,404 - AO356_29415 0.74 -1.0
6,843,431 + AO356_29415 0.80 -0.5
6,843,432 - AO356_29415 0.80 -1.6
6,843,432 - AO356_29415 0.80 +0.5
6,843,596 + -0.9
6,843,639 + -0.1
6,843,684 - +0.4
6,843,720 - -0.1
6,843,720 - +0.1
6,843,853 - AO356_29420 0.19 +1.5

Or see this region's nucleotide sequence