Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18655

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18650 and AO356_18655 are separated by 371 nucleotidesAO356_18655 and AO356_18660 overlap by 4 nucleotidesAO356_18660 and AO356_18665 are separated by 91 nucleotides AO356_18650: AO356_18650 - lysine transporter LysE, at 4,190,908 to 4,191,528 _18650 AO356_18655: AO356_18655 - toxin HipA, at 4,191,900 to 4,193,216 _18655 AO356_18660: AO356_18660 - transcriptional regulator, at 4,193,213 to 4,193,617 _18660 AO356_18665: AO356_18665 - antitoxin, at 4,193,709 to 4,193,954 _18665 Position (kb) 4191 4192 4193 4194Strain fitness (log2 ratio) -2 -1 0 1 2at 4190.909 kb on + strandat 4190.909 kb on + strandat 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.181 kb on + strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.182 kb on - strand, within AO356_18650at 4191.183 kb on + strand, within AO356_18650at 4191.183 kb on + strand, within AO356_18650at 4191.184 kb on - strand, within AO356_18650at 4191.184 kb on - strand, within AO356_18650at 4191.184 kb on - strand, within AO356_18650at 4191.275 kb on + strand, within AO356_18650at 4191.275 kb on + strand, within AO356_18650at 4191.276 kb on - strand, within AO356_18650at 4191.276 kb on - strand, within AO356_18650at 4191.276 kb on - strand, within AO356_18650at 4191.276 kb on - strand, within AO356_18650at 4191.304 kb on + strand, within AO356_18650at 4191.305 kb on - strand, within AO356_18650at 4191.335 kb on + strand, within AO356_18650at 4191.344 kb on - strand, within AO356_18650at 4191.371 kb on + strand, within AO356_18650at 4191.371 kb on + strand, within AO356_18650at 4191.371 kb on + strand, within AO356_18650at 4191.371 kb on + strand, within AO356_18650at 4191.371 kb on + strand, within AO356_18650at 4191.371 kb on + strand, within AO356_18650at 4191.371 kb on + strand, within AO356_18650at 4191.372 kb on - strand, within AO356_18650at 4191.372 kb on - strand, within AO356_18650at 4191.375 kb on + strand, within AO356_18650at 4191.375 kb on + strand, within AO356_18650at 4191.375 kb on + strand, within AO356_18650at 4191.376 kb on - strand, within AO356_18650at 4191.376 kb on - strand, within AO356_18650at 4191.376 kb on - strand, within AO356_18650at 4191.376 kb on - strand, within AO356_18650at 4191.376 kb on - strand, within AO356_18650at 4191.376 kb on - strand, within AO356_18650at 4191.376 kb on - strand, within AO356_18650at 4191.376 kb on - strand, within AO356_18650at 4191.541 kb on - strandat 4191.557 kb on + strandat 4191.572 kb on + strandat 4191.589 kb on + strandat 4191.589 kb on + strandat 4191.590 kb on - strandat 4191.590 kb on - strandat 4191.590 kb on - strandat 4191.595 kb on + strandat 4191.597 kb on + strandat 4191.597 kb on + strandat 4191.598 kb on - strandat 4191.598 kb on - strandat 4191.624 kb on + strandat 4191.624 kb on + strandat 4191.625 kb on - strandat 4191.625 kb on - strandat 4191.625 kb on - strandat 4191.670 kb on + strandat 4191.670 kb on + strandat 4191.671 kb on - strandat 4191.671 kb on - strandat 4191.714 kb on + strandat 4192.006 kb on + strandat 4192.006 kb on + strandat 4192.006 kb on + strandat 4192.011 kb on + strandat 4192.011 kb on + strandat 4192.011 kb on + strandat 4192.011 kb on + strandat 4192.011 kb on + strandat 4192.023 kb on + strandat 4192.023 kb on + strandat 4192.023 kb on + strandat 4192.023 kb on + strandat 4192.027 kb on + strandat 4192.027 kb on + strandat 4192.027 kb on + strandat 4192.032 kb on + strand, within AO356_18655at 4192.032 kb on + strand, within AO356_18655at 4192.043 kb on + strand, within AO356_18655at 4192.043 kb on + strand, within AO356_18655at 4192.134 kb on + strand, within AO356_18655at 4192.144 kb on + strand, within AO356_18655at 4192.286 kb on + strand, within AO356_18655at 4192.286 kb on + strand, within AO356_18655at 4192.286 kb on + strand, within AO356_18655at 4192.286 kb on + strand, within AO356_18655at 4192.286 kb on + strand, within AO356_18655at 4192.356 kb on + strand, within AO356_18655at 4192.356 kb on + strand, within AO356_18655at 4192.356 kb on + strand, within AO356_18655at 4192.362 kb on + strand, within AO356_18655at 4192.424 kb on + strand, within AO356_18655at 4192.424 kb on + strand, within AO356_18655at 4192.452 kb on + strand, within AO356_18655at 4192.452 kb on + strand, within AO356_18655at 4192.557 kb on + strand, within AO356_18655at 4192.557 kb on + strand, within AO356_18655at 4192.563 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.595 kb on + strand, within AO356_18655at 4192.595 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.828 kb on + strand, within AO356_18655at 4192.836 kb on + strand, within AO356_18655at 4192.863 kb on - strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.942 kb on - strand, within AO356_18655at 4193.009 kb on + strand, within AO356_18655at 4193.009 kb on + strand, within AO356_18655at 4193.032 kb on + strand, within AO356_18655at 4193.032 kb on + strand, within AO356_18655at 4193.165 kb on + strandat 4193.551 kb on + strand, within AO356_18660at 4193.616 kb on - strandat 4193.643 kb on + strandat 4193.643 kb on + strandat 4193.644 kb on - strandat 4193.644 kb on - strandat 4193.644 kb on - strandat 4193.644 kb on - strandat 4193.644 kb on - strandat 4193.663 kb on + strandat 4193.663 kb on + strandat 4193.664 kb on - strandat 4193.664 kb on - strandat 4193.708 kb on + strandat 4193.708 kb on + strandat 4193.708 kb on + strandat 4193.708 kb on + strandat 4193.708 kb on + strandat 4193.709 kb on - strandat 4193.709 kb on - strandat 4193.709 kb on - strandat 4193.709 kb on - strandat 4193.728 kb on + strandat 4193.728 kb on + strandat 4193.729 kb on - strandat 4193.729 kb on - strandat 4193.729 kb on - strandat 4193.729 kb on - strandat 4193.758 kb on + strand, within AO356_18665at 4193.758 kb on + strand, within AO356_18665at 4193.758 kb on + strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.820 kb on + strand, within AO356_18665at 4193.820 kb on + strand, within AO356_18665at 4193.820 kb on + strand, within AO356_18665at 4193.846 kb on + strand, within AO356_18665at 4193.846 kb on + strand, within AO356_18665at 4193.846 kb on + strand, within AO356_18665at 4193.847 kb on - strand, within AO356_18665at 4193.847 kb on - strand, within AO356_18665at 4194.027 kb on + strandat 4194.027 kb on + strandat 4194.027 kb on + strandat 4194.182 kb on + strandat 4194.182 kb on + strandat 4194.182 kb on + strandat 4194.182 kb on + strandat 4194.182 kb on + strandat 4194.183 kb on - strandat 4194.183 kb on - strandat 4194.183 kb on - strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,190,909 + +0.2
4,190,909 + +1.8
4,191,181 + AO356_18650 0.44 -0.0
4,191,181 + AO356_18650 0.44 -0.0
4,191,181 + AO356_18650 0.44 +1.6
4,191,181 + AO356_18650 0.44 +0.0
4,191,181 + AO356_18650 0.44 -0.5
4,191,181 + AO356_18650 0.44 -0.2
4,191,181 + AO356_18650 0.44 -0.7
4,191,181 + AO356_18650 0.44 +0.3
4,191,181 + AO356_18650 0.44 +0.3
4,191,181 + AO356_18650 0.44 +0.8
4,191,181 + AO356_18650 0.44 +0.6
4,191,181 + AO356_18650 0.44 +0.5
4,191,182 - AO356_18650 0.44 +0.6
4,191,182 - AO356_18650 0.44 -0.9
4,191,182 - AO356_18650 0.44 +0.4
4,191,182 - AO356_18650 0.44 +0.8
4,191,182 - AO356_18650 0.44 -0.5
4,191,182 - AO356_18650 0.44 -0.4
4,191,182 - AO356_18650 0.44 +0.5
4,191,182 - AO356_18650 0.44 +1.0
4,191,182 - AO356_18650 0.44 -0.7
4,191,182 - AO356_18650 0.44 -0.0
4,191,182 - AO356_18650 0.44 +0.2
4,191,182 - AO356_18650 0.44 -0.6
4,191,183 + AO356_18650 0.44 +0.1
4,191,183 + AO356_18650 0.44 -0.1
4,191,184 - AO356_18650 0.44 -1.4
4,191,184 - AO356_18650 0.44 +0.7
4,191,184 - AO356_18650 0.44 -0.2
4,191,275 + AO356_18650 0.59 -0.5
4,191,275 + AO356_18650 0.59 -0.3
4,191,276 - AO356_18650 0.59 +0.1
4,191,276 - AO356_18650 0.59 +0.3
4,191,276 - AO356_18650 0.59 +1.5
4,191,276 - AO356_18650 0.59 -0.1
4,191,304 + AO356_18650 0.64 +0.1
4,191,305 - AO356_18650 0.64 +1.2
4,191,335 + AO356_18650 0.69 +0.5
4,191,344 - AO356_18650 0.70 +0.4
4,191,371 + AO356_18650 0.75 +0.1
4,191,371 + AO356_18650 0.75 +0.2
4,191,371 + AO356_18650 0.75 +1.2
4,191,371 + AO356_18650 0.75 +0.6
4,191,371 + AO356_18650 0.75 +0.2
4,191,371 + AO356_18650 0.75 -0.6
4,191,371 + AO356_18650 0.75 +0.4
4,191,372 - AO356_18650 0.75 +0.5
4,191,372 - AO356_18650 0.75 +0.2
4,191,375 + AO356_18650 0.75 +2.2
4,191,375 + AO356_18650 0.75 +0.4
4,191,375 + AO356_18650 0.75 -0.0
4,191,376 - AO356_18650 0.75 +0.3
4,191,376 - AO356_18650 0.75 -0.2
4,191,376 - AO356_18650 0.75 +0.0
4,191,376 - AO356_18650 0.75 +0.3
4,191,376 - AO356_18650 0.75 -0.1
4,191,376 - AO356_18650 0.75 -0.2
4,191,376 - AO356_18650 0.75 +1.2
4,191,376 - AO356_18650 0.75 +0.5
4,191,541 - +0.3
4,191,557 + +0.3
4,191,572 + -0.8
4,191,589 + +0.7
4,191,589 + +0.2
4,191,590 - -1.0
4,191,590 - -0.5
4,191,590 - +1.1
4,191,595 + -0.5
4,191,597 + +1.4
4,191,597 + +0.4
4,191,598 - -0.3
4,191,598 - -0.1
4,191,624 + +0.3
4,191,624 + -0.1
4,191,625 - +1.2
4,191,625 - -0.1
4,191,625 - -0.3
4,191,670 + -0.5
4,191,670 + -1.5
4,191,671 - -0.4
4,191,671 - -0.3
4,191,714 + +0.2
4,192,006 + +1.1
4,192,006 + -0.4
4,192,006 + +2.1
4,192,011 + -0.5
4,192,011 + -0.2
4,192,011 + +1.3
4,192,011 + -1.1
4,192,011 + +0.8
4,192,023 + -0.5
4,192,023 + +0.1
4,192,023 + +1.0
4,192,023 + +0.0
4,192,027 + -0.0
4,192,027 + -0.7
4,192,027 + -0.3
4,192,032 + AO356_18655 0.10 -0.1
4,192,032 + AO356_18655 0.10 +0.9
4,192,043 + AO356_18655 0.11 -1.2
4,192,043 + AO356_18655 0.11 -0.6
4,192,134 + AO356_18655 0.18 +1.5
4,192,144 + AO356_18655 0.19 -0.1
4,192,286 + AO356_18655 0.29 +0.0
4,192,286 + AO356_18655 0.29 -0.2
4,192,286 + AO356_18655 0.29 +0.8
4,192,286 + AO356_18655 0.29 +0.8
4,192,286 + AO356_18655 0.29 +0.9
4,192,356 + AO356_18655 0.35 -0.2
4,192,356 + AO356_18655 0.35 +0.9
4,192,356 + AO356_18655 0.35 -0.6
4,192,362 + AO356_18655 0.35 -0.4
4,192,424 + AO356_18655 0.40 +1.2
4,192,424 + AO356_18655 0.40 -0.5
4,192,452 + AO356_18655 0.42 -0.2
4,192,452 + AO356_18655 0.42 +0.7
4,192,557 + AO356_18655 0.50 -0.1
4,192,557 + AO356_18655 0.50 +0.1
4,192,563 + AO356_18655 0.50 -0.5
4,192,566 + AO356_18655 0.51 +0.4
4,192,566 + AO356_18655 0.51 -0.3
4,192,566 + AO356_18655 0.51 +0.2
4,192,566 + AO356_18655 0.51 +0.3
4,192,566 + AO356_18655 0.51 +0.8
4,192,595 + AO356_18655 0.53 -0.7
4,192,595 + AO356_18655 0.53 +1.4
4,192,604 + AO356_18655 0.53 +0.7
4,192,604 + AO356_18655 0.53 +0.5
4,192,604 + AO356_18655 0.53 -0.1
4,192,604 + AO356_18655 0.53 +0.2
4,192,604 + AO356_18655 0.53 +0.5
4,192,604 + AO356_18655 0.53 -0.2
4,192,604 + AO356_18655 0.53 +0.4
4,192,720 + AO356_18655 0.62 +0.4
4,192,720 + AO356_18655 0.62 +0.2
4,192,720 + AO356_18655 0.62 -0.7
4,192,720 + AO356_18655 0.62 +0.3
4,192,720 + AO356_18655 0.62 -2.0
4,192,828 + AO356_18655 0.70 -0.1
4,192,836 + AO356_18655 0.71 -0.3
4,192,863 - AO356_18655 0.73 -1.0
4,192,941 + AO356_18655 0.79 -0.0
4,192,941 + AO356_18655 0.79 -0.6
4,192,941 + AO356_18655 0.79 +0.1
4,192,941 + AO356_18655 0.79 +0.8
4,192,941 + AO356_18655 0.79 +0.2
4,192,941 + AO356_18655 0.79 -0.2
4,192,941 + AO356_18655 0.79 +0.4
4,192,942 - AO356_18655 0.79 +0.4
4,193,009 + AO356_18655 0.84 +0.2
4,193,009 + AO356_18655 0.84 +0.3
4,193,032 + AO356_18655 0.86 +0.4
4,193,032 + AO356_18655 0.86 -1.1
4,193,165 + -0.4
4,193,551 + AO356_18660 0.83 +0.2
4,193,616 - +0.3
4,193,643 + +0.7
4,193,643 + +1.9
4,193,644 - -2.3
4,193,644 - +0.8
4,193,644 - -0.1
4,193,644 - +1.2
4,193,644 - +2.2
4,193,663 + +0.2
4,193,663 + -0.9
4,193,664 - +0.0
4,193,664 - -0.2
4,193,708 + -0.8
4,193,708 + -0.0
4,193,708 + -0.4
4,193,708 + +0.2
4,193,708 + -0.4
4,193,709 - +0.4
4,193,709 - +0.8
4,193,709 - +0.9
4,193,709 - -1.6
4,193,728 + -0.1
4,193,728 + +0.1
4,193,729 - +0.9
4,193,729 - -0.1
4,193,729 - +0.2
4,193,729 - +0.0
4,193,758 + AO356_18665 0.20 +0.7
4,193,758 + AO356_18665 0.20 +1.2
4,193,758 + AO356_18665 0.20 +0.8
4,193,759 - AO356_18665 0.20 -0.5
4,193,759 - AO356_18665 0.20 +0.4
4,193,759 - AO356_18665 0.20 -0.3
4,193,759 - AO356_18665 0.20 +0.1
4,193,759 - AO356_18665 0.20 -0.1
4,193,759 - AO356_18665 0.20 +0.4
4,193,820 + AO356_18665 0.45 -0.3
4,193,820 + AO356_18665 0.45 +0.9
4,193,820 + AO356_18665 0.45 +1.1
4,193,846 + AO356_18665 0.56 +0.4
4,193,846 + AO356_18665 0.56 +0.9
4,193,846 + AO356_18665 0.56 +0.6
4,193,847 - AO356_18665 0.56 -0.0
4,193,847 - AO356_18665 0.56 +0.2
4,194,027 + -0.1
4,194,027 + +0.0
4,194,027 + +0.8
4,194,182 + -0.3
4,194,182 + +0.1
4,194,182 + +0.4
4,194,182 + +0.7
4,194,182 + -0.7
4,194,183 - +0.6
4,194,183 - -0.5
4,194,183 - +0.6
4,194,192 + +0.3
4,194,192 + -0.7
4,194,192 + -1.2
4,194,192 + +0.3
4,194,192 + +0.4
4,194,192 + +1.1
4,194,192 + -1.0
4,194,193 - +0.5
4,194,193 - +0.2
4,194,193 - +0.5
4,194,193 - -0.1
4,194,193 - -0.2
4,194,193 - +0.7
4,194,193 - +0.2

Or see this region's nucleotide sequence