Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14380

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14375 and AO356_14380 are separated by 121 nucleotidesAO356_14380 and AO356_14385 are separated by 346 nucleotides AO356_14375: AO356_14375 - histidine kinase, at 3,268,992 to 3,271,388 _14375 AO356_14380: AO356_14380 - transcriptional regulator, at 3,271,510 to 3,272,139 _14380 AO356_14385: AO356_14385 - spermidine/putrescine ABC transporter ATP-binding protein, at 3,272,486 to 3,273,610 _14385 Position (kb) 3271 3272 3273Strain fitness (log2 ratio) -1 0 1 2at 3270.669 kb on + strand, within AO356_14375at 3270.669 kb on + strand, within AO356_14375at 3270.669 kb on + strand, within AO356_14375at 3270.669 kb on + strand, within AO356_14375at 3270.669 kb on + strand, within AO356_14375at 3270.670 kb on - strand, within AO356_14375at 3270.670 kb on - strand, within AO356_14375at 3270.670 kb on - strand, within AO356_14375at 3270.670 kb on - strand, within AO356_14375at 3270.670 kb on - strand, within AO356_14375at 3270.879 kb on + strand, within AO356_14375at 3270.879 kb on + strand, within AO356_14375at 3270.880 kb on - strand, within AO356_14375at 3270.880 kb on - strand, within AO356_14375at 3270.914 kb on + strand, within AO356_14375at 3270.915 kb on - strand, within AO356_14375at 3270.915 kb on - strand, within AO356_14375at 3270.915 kb on - strand, within AO356_14375at 3271.172 kb on + strandat 3271.172 kb on + strandat 3271.173 kb on - strandat 3271.173 kb on - strandat 3271.173 kb on - strandat 3271.210 kb on + strandat 3271.210 kb on + strandat 3271.210 kb on + strandat 3271.210 kb on + strandat 3271.210 kb on + strandat 3271.210 kb on + strandat 3271.211 kb on - strandat 3271.211 kb on - strandat 3271.211 kb on - strandat 3271.211 kb on - strandat 3271.211 kb on - strandat 3271.211 kb on - strandat 3271.237 kb on + strandat 3271.238 kb on - strandat 3271.244 kb on + strandat 3271.244 kb on + strandat 3271.244 kb on + strandat 3271.245 kb on - strandat 3271.451 kb on + strandat 3271.451 kb on + strandat 3271.451 kb on + strandat 3271.451 kb on + strandat 3271.452 kb on - strandat 3271.452 kb on - strandat 3271.452 kb on - strandat 3271.452 kb on - strandat 3271.452 kb on - strandat 3271.452 kb on - strandat 3271.452 kb on - strandat 3271.452 kb on - strandat 3271.506 kb on + strandat 3271.506 kb on + strandat 3271.506 kb on + strandat 3271.506 kb on + strandat 3271.506 kb on + strandat 3271.506 kb on + strandat 3271.506 kb on + strandat 3271.506 kb on + strandat 3271.506 kb on + strandat 3271.507 kb on - strandat 3271.507 kb on - strandat 3271.507 kb on - strandat 3271.507 kb on - strandat 3271.507 kb on - strandat 3271.507 kb on - strandat 3271.507 kb on - strandat 3271.507 kb on - strandat 3271.507 kb on - strandat 3271.520 kb on + strandat 3271.520 kb on + strandat 3271.521 kb on - strandat 3271.879 kb on + strand, within AO356_14380at 3271.880 kb on - strand, within AO356_14380at 3271.880 kb on - strand, within AO356_14380at 3272.113 kb on + strandat 3272.114 kb on - strandat 3272.114 kb on - strandat 3272.114 kb on - strandat 3272.263 kb on + strandat 3272.263 kb on + strandat 3272.264 kb on - strandat 3272.302 kb on + strandat 3272.302 kb on + strandat 3272.302 kb on + strandat 3272.302 kb on + strandat 3272.303 kb on - strandat 3272.303 kb on - strandat 3272.303 kb on - strandat 3272.303 kb on - strandat 3272.303 kb on - strandat 3272.339 kb on + strandat 3272.339 kb on + strandat 3272.340 kb on - strandat 3272.360 kb on + strandat 3272.360 kb on + strandat 3272.361 kb on - strandat 3272.443 kb on + strandat 3272.443 kb on + strandat 3272.444 kb on - strandat 3272.444 kb on - strandat 3272.486 kb on - strandat 3272.486 kb on - strandat 3272.555 kb on + strandat 3272.555 kb on + strandat 3272.555 kb on + strandat 3272.556 kb on - strandat 3272.556 kb on - strandat 3272.556 kb on - strandat 3272.556 kb on - strandat 3272.771 kb on + strand, within AO356_14385at 3272.771 kb on + strand, within AO356_14385at 3272.771 kb on + strand, within AO356_14385at 3272.771 kb on + strand, within AO356_14385at 3272.771 kb on + strand, within AO356_14385at 3272.772 kb on - strand, within AO356_14385at 3272.772 kb on - strand, within AO356_14385at 3272.772 kb on - strand, within AO356_14385at 3272.772 kb on - strand, within AO356_14385at 3273.086 kb on + strand, within AO356_14385at 3273.086 kb on + strand, within AO356_14385at 3273.087 kb on - strand, within AO356_14385at 3273.087 kb on - strand, within AO356_14385at 3273.087 kb on - strand, within AO356_14385

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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3,270,669 + AO356_14375 0.70 -0.2
3,270,669 + AO356_14375 0.70 +1.5
3,270,669 + AO356_14375 0.70 +0.3
3,270,669 + AO356_14375 0.70 -0.2
3,270,669 + AO356_14375 0.70 -0.7
3,270,670 - AO356_14375 0.70 -0.5
3,270,670 - AO356_14375 0.70 +0.2
3,270,670 - AO356_14375 0.70 +1.0
3,270,670 - AO356_14375 0.70 -0.8
3,270,670 - AO356_14375 0.70 -0.4
3,270,879 + AO356_14375 0.79 +0.2
3,270,879 + AO356_14375 0.79 +0.5
3,270,880 - AO356_14375 0.79 +1.3
3,270,880 - AO356_14375 0.79 -0.3
3,270,914 + AO356_14375 0.80 +0.3
3,270,915 - AO356_14375 0.80 -0.2
3,270,915 - AO356_14375 0.80 -0.9
3,270,915 - AO356_14375 0.80 -0.5
3,271,172 + +0.7
3,271,172 + +0.1
3,271,173 - +1.0
3,271,173 - +1.8
3,271,173 - +0.0
3,271,210 + -0.3
3,271,210 + +1.5
3,271,210 + -0.9
3,271,210 + +0.5
3,271,210 + +1.3
3,271,210 + +0.1
3,271,211 - -0.3
3,271,211 - +0.5
3,271,211 - -1.4
3,271,211 - -0.2
3,271,211 - +0.3
3,271,211 - +0.2
3,271,237 + -0.3
3,271,238 - -0.5
3,271,244 + -0.1
3,271,244 + -0.6
3,271,244 + +0.7
3,271,245 - -0.6
3,271,451 + +0.1
3,271,451 + +0.7
3,271,451 + +0.4
3,271,451 + -0.3
3,271,452 - -0.3
3,271,452 - +0.5
3,271,452 - +1.0
3,271,452 - +0.4
3,271,452 - +0.2
3,271,452 - -0.3
3,271,452 - +0.3
3,271,452 - +0.0
3,271,506 + -0.1
3,271,506 + -0.4
3,271,506 + -1.3
3,271,506 + +0.8
3,271,506 + -0.0
3,271,506 + +1.1
3,271,506 + -1.2
3,271,506 + +0.4
3,271,506 + +0.5
3,271,507 - -0.5
3,271,507 - +0.5
3,271,507 - +0.2
3,271,507 - +0.7
3,271,507 - +1.1
3,271,507 - +0.5
3,271,507 - +0.2
3,271,507 - -0.5
3,271,507 - +0.6
3,271,520 + -0.0
3,271,520 + -0.2
3,271,521 - +0.6
3,271,879 + AO356_14380 0.59 +1.0
3,271,880 - AO356_14380 0.59 +0.9
3,271,880 - AO356_14380 0.59 -0.0
3,272,113 + -0.5
3,272,114 - -0.1
3,272,114 - +0.1
3,272,114 - +0.2
3,272,263 + +0.5
3,272,263 + +0.8
3,272,264 - -0.9
3,272,302 + +0.1
3,272,302 + +0.3
3,272,302 + +1.2
3,272,302 + +0.6
3,272,303 - +0.1
3,272,303 - +1.4
3,272,303 - -0.0
3,272,303 - +0.2
3,272,303 - -0.7
3,272,339 + +0.2
3,272,339 + +1.2
3,272,340 - +0.9
3,272,360 + +0.7
3,272,360 + -0.6
3,272,361 - +0.7
3,272,443 + -0.0
3,272,443 + -0.2
3,272,444 - -0.9
3,272,444 - -0.3
3,272,486 - -1.2
3,272,486 - +0.3
3,272,555 + -0.3
3,272,555 + +0.0
3,272,555 + -0.5
3,272,556 - -1.3
3,272,556 - -0.5
3,272,556 - -0.1
3,272,556 - -0.0
3,272,771 + AO356_14385 0.25 -0.2
3,272,771 + AO356_14385 0.25 +1.0
3,272,771 + AO356_14385 0.25 +0.7
3,272,771 + AO356_14385 0.25 -0.1
3,272,771 + AO356_14385 0.25 -0.2
3,272,772 - AO356_14385 0.25 +1.0
3,272,772 - AO356_14385 0.25 -0.2
3,272,772 - AO356_14385 0.25 +0.2
3,272,772 - AO356_14385 0.25 +0.0
3,273,086 + AO356_14385 0.53 -0.0
3,273,086 + AO356_14385 0.53 -0.2
3,273,087 - AO356_14385 0.53 +0.0
3,273,087 - AO356_14385 0.53 +1.1
3,273,087 - AO356_14385 0.53 +0.5

Or see this region's nucleotide sequence