Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02505

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02500 and AO356_02505 are separated by 275 nucleotidesAO356_02505 and AO356_02510 are separated by 64 nucleotides AO356_02500: AO356_02500 - 2-alkenal reductase, at 542,300 to 543,334 _02500 AO356_02505: AO356_02505 - nucleoid-associated protein, at 543,610 to 543,948 _02505 AO356_02510: AO356_02510 - DNA polymerase III subunit gamma/tau, at 544,013 to 546,088 _02510 Position (kb) 543 544Strain fitness (log2 ratio) -2 -1 0 1at 542.670 kb on + strand, within AO356_02500at 542.670 kb on + strand, within AO356_02500at 542.670 kb on + strand, within AO356_02500at 542.671 kb on - strand, within AO356_02500at 542.671 kb on - strand, within AO356_02500at 542.675 kb on - strand, within AO356_02500at 542.675 kb on - strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.769 kb on + strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.770 kb on - strand, within AO356_02500at 542.922 kb on + strand, within AO356_02500at 542.922 kb on + strand, within AO356_02500at 542.922 kb on + strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 542.923 kb on - strand, within AO356_02500at 543.144 kb on + strand, within AO356_02500at 543.144 kb on + strand, within AO356_02500at 543.145 kb on - strand, within AO356_02500at 543.145 kb on - strand, within AO356_02500at 543.177 kb on + strand, within AO356_02500at 543.178 kb on - strand, within AO356_02500at 543.366 kb on + strandat 543.366 kb on + strandat 543.366 kb on + strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.368 kb on + strandat 543.368 kb on + strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.447 kb on + strandat 543.514 kb on + strandat 543.514 kb on + strandat 543.514 kb on + strandat 543.514 kb on + strandat 543.523 kb on + strandat 543.524 kb on - strandat 543.539 kb on + strandat 543.584 kb on + strandat 543.585 kb on - strandat 543.585 kb on - strandat 543.585 kb on - strandat 544.014 kb on + strandat 544.014 kb on + strandat 544.014 kb on + strandat 544.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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542,670 + AO356_02500 0.36 -0.3
542,670 + AO356_02500 0.36 +0.3
542,670 + AO356_02500 0.36 +0.4
542,671 - AO356_02500 0.36 -1.4
542,671 - AO356_02500 0.36 +0.8
542,675 - AO356_02500 0.36 -1.1
542,675 - AO356_02500 0.36 -0.2
542,769 + AO356_02500 0.45 -0.5
542,769 + AO356_02500 0.45 +0.2
542,769 + AO356_02500 0.45 +0.0
542,769 + AO356_02500 0.45 -0.4
542,769 + AO356_02500 0.45 +0.0
542,769 + AO356_02500 0.45 -2.4
542,770 - AO356_02500 0.45 +0.1
542,770 - AO356_02500 0.45 -0.1
542,770 - AO356_02500 0.45 +1.0
542,770 - AO356_02500 0.45 -0.2
542,770 - AO356_02500 0.45 +0.8
542,770 - AO356_02500 0.45 -0.0
542,770 - AO356_02500 0.45 +0.8
542,770 - AO356_02500 0.45 +0.3
542,922 + AO356_02500 0.60 +0.7
542,922 + AO356_02500 0.60 +1.2
542,922 + AO356_02500 0.60 +0.7
542,923 - AO356_02500 0.60 -0.2
542,923 - AO356_02500 0.60 +0.2
542,923 - AO356_02500 0.60 -0.3
542,923 - AO356_02500 0.60 +0.3
542,923 - AO356_02500 0.60 -1.2
542,923 - AO356_02500 0.60 +0.3
543,144 + AO356_02500 0.82 -0.5
543,144 + AO356_02500 0.82 -0.3
543,145 - AO356_02500 0.82 +0.5
543,145 - AO356_02500 0.82 -1.9
543,177 + AO356_02500 0.85 -0.0
543,178 - AO356_02500 0.85 -1.3
543,366 + -1.0
543,366 + -1.2
543,366 + -0.1
543,367 - +1.0
543,367 - +0.3
543,367 - +0.1
543,367 - +0.7
543,367 - -0.5
543,367 - +0.4
543,367 - -0.3
543,367 - -0.2
543,367 - +0.4
543,367 - -1.1
543,368 + -1.1
543,368 + +0.0
543,369 - +0.2
543,369 - -0.5
543,369 - +0.1
543,447 + +0.8
543,514 + -0.5
543,514 + -0.2
543,514 + -0.0
543,514 + +0.5
543,523 + -0.4
543,524 - +0.8
543,539 + +0.6
543,584 + -0.4
543,585 - -0.6
543,585 - +0.0
543,585 - +0.7
544,014 + +0.3
544,014 + +0.2
544,014 + -0.3
544,015 - -0.8

Or see this region's nucleotide sequence