Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11975

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11965 and ABZR87_RS11970 are separated by 123 nucleotidesABZR87_RS11970 and ABZR87_RS11975 overlap by 26 nucleotidesABZR87_RS11975 and ABZR87_RS11980 are separated by 270 nucleotidesABZR87_RS11980 and ABZR87_RS11985 are separated by 76 nucleotides ABZR87_RS11965: ABZR87_RS11965 - IMP dehydrogenase, at 2,540,046 to 2,541,509 _RS11965 ABZR87_RS11970: ABZR87_RS11970 - hypothetical protein, at 2,541,633 to 2,542,211 _RS11970 ABZR87_RS11975: ABZR87_RS11975 - glutamine-hydrolyzing GMP synthase, at 2,542,186 to 2,543,805 _RS11975 ABZR87_RS11980: ABZR87_RS11980 - cold-shock protein, at 2,544,076 to 2,544,279 _RS11980 ABZR87_RS11985: ABZR87_RS11985 - DUF5074 domain-containing protein, at 2,544,356 to 2,545,000 _RS11985 Position (kb) 2542 2543 2544Strain fitness (log2 ratio) -2 -1 0 1at 2541.536 kb on + strandat 2541.536 kb on + strandat 2541.536 kb on + strandat 2541.550 kb on + strandat 2541.550 kb on + strandat 2541.765 kb on + strand, within ABZR87_RS11970at 2542.116 kb on + strand, within ABZR87_RS11970at 2543.894 kb on - strandat 2543.894 kb on - strandat 2543.898 kb on - strandat 2543.898 kb on - strandat 2543.898 kb on - strandat 2543.929 kb on + strandat 2543.930 kb on - strandat 2543.961 kb on + strandat 2543.994 kb on + strandat 2543.995 kb on - strandat 2543.995 kb on - strandat 2544.092 kb on + strandat 2544.092 kb on + strandat 2544.093 kb on - strandat 2544.093 kb on - strandat 2544.093 kb on - strandat 2544.223 kb on + strand, within ABZR87_RS11980at 2544.358 kb on - strandat 2544.358 kb on - strandat 2544.460 kb on + strand, within ABZR87_RS11985at 2544.461 kb on - strand, within ABZR87_RS11985at 2544.476 kb on - strand, within ABZR87_RS11985at 2544.476 kb on - strand, within ABZR87_RS11985at 2544.532 kb on + strand, within ABZR87_RS11985at 2544.533 kb on - strand, within ABZR87_RS11985at 2544.614 kb on + strand, within ABZR87_RS11985at 2544.614 kb on + strand, within ABZR87_RS11985at 2544.615 kb on - strand, within ABZR87_RS11985at 2544.663 kb on + strand, within ABZR87_RS11985

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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2,541,536 + +0.1
2,541,536 + +0.4
2,541,536 + -0.2
2,541,550 + -0.1
2,541,550 + -0.4
2,541,765 + ABZR87_RS11970 0.23 -0.1
2,542,116 + ABZR87_RS11970 0.83 -0.6
2,543,894 - -2.7
2,543,894 - -0.1
2,543,898 - +0.5
2,543,898 - -0.1
2,543,898 - +0.8
2,543,929 + +0.1
2,543,930 - +0.4
2,543,961 + -1.0
2,543,994 + +0.5
2,543,995 - +0.3
2,543,995 - +0.5
2,544,092 + +0.3
2,544,092 + -1.2
2,544,093 - -0.7
2,544,093 - +0.3
2,544,093 - +0.0
2,544,223 + ABZR87_RS11980 0.72 +1.2
2,544,358 - -0.7
2,544,358 - +0.0
2,544,460 + ABZR87_RS11985 0.16 +1.7
2,544,461 - ABZR87_RS11985 0.16 +0.2
2,544,476 - ABZR87_RS11985 0.19 -0.2
2,544,476 - ABZR87_RS11985 0.19 -0.5
2,544,532 + ABZR87_RS11985 0.27 -0.8
2,544,533 - ABZR87_RS11985 0.27 +0.2
2,544,614 + ABZR87_RS11985 0.40 +0.1
2,544,614 + ABZR87_RS11985 0.40 +0.4
2,544,615 - ABZR87_RS11985 0.40 +0.4
2,544,663 + ABZR87_RS11985 0.48 -0.6

Or see this region's nucleotide sequence