Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10230 and ABZR87_RS10235 are separated by 74 nucleotides ABZR87_RS10235 and ABZR87_RS10240 are separated by 122 nucleotides
ABZR87_RS10230: ABZR87_RS10230 - beta-N-acetylhexosaminidase, at 2,168,899 to 2,169,948
_RS10230
ABZR87_RS10235: ABZR87_RS10235 - elongation factor P, at 2,170,023 to 2,170,592
_RS10235
ABZR87_RS10240: ABZR87_RS10240 - elongation factor P maturation arginine rhamnosyltransferase EarP, at 2,170,715 to 2,171,908
_RS10240
Position (kb)
2170
2171 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2169.150 kb on + strand, within ABZR87_RS10230 at 2169.150 kb on + strand, within ABZR87_RS10230 at 2169.151 kb on - strand, within ABZR87_RS10230 at 2169.236 kb on - strand, within ABZR87_RS10230 at 2169.443 kb on - strand, within ABZR87_RS10230 at 2169.443 kb on - strand, within ABZR87_RS10230 at 2169.575 kb on - strand, within ABZR87_RS10230 at 2169.678 kb on + strand, within ABZR87_RS10230 at 2169.678 kb on + strand, within ABZR87_RS10230 at 2169.678 kb on + strand, within ABZR87_RS10230 at 2169.679 kb on - strand, within ABZR87_RS10230 at 2169.679 kb on - strand, within ABZR87_RS10230 at 2169.679 kb on - strand, within ABZR87_RS10230 at 2169.679 kb on - strand, within ABZR87_RS10230 at 2169.901 kb on + strand at 2169.901 kb on + strand at 2169.947 kb on - strand at 2169.947 kb on - strand at 2170.024 kb on + strand at 2170.025 kb on - strand at 2170.025 kb on - strand at 2170.616 kb on + strand at 2170.617 kb on - strand at 2170.617 kb on - strand at 2170.617 kb on - strand at 2170.617 kb on - strand at 2170.701 kb on + strand at 2170.702 kb on - strand at 2170.959 kb on - strand, within ABZR87_RS10240 at 2170.977 kb on + strand, within ABZR87_RS10240 at 2171.076 kb on + strand, within ABZR87_RS10240 at 2171.077 kb on - strand, within ABZR87_RS10240 at 2171.077 kb on - strand, within ABZR87_RS10240 at 2171.077 kb on - strand, within ABZR87_RS10240 at 2171.077 kb on - strand, within ABZR87_RS10240 at 2171.077 kb on - strand, within ABZR87_RS10240
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 2,169,150 + ABZR87_RS10230 0.24 -1.2 2,169,150 + ABZR87_RS10230 0.24 +2.0 2,169,151 - ABZR87_RS10230 0.24 -0.1 2,169,236 - ABZR87_RS10230 0.32 +0.7 2,169,443 - ABZR87_RS10230 0.52 +0.5 2,169,443 - ABZR87_RS10230 0.52 +0.2 2,169,575 - ABZR87_RS10230 0.64 +0.6 2,169,678 + ABZR87_RS10230 0.74 +0.5 2,169,678 + ABZR87_RS10230 0.74 +0.7 2,169,678 + ABZR87_RS10230 0.74 +1.3 2,169,679 - ABZR87_RS10230 0.74 -0.1 2,169,679 - ABZR87_RS10230 0.74 -0.2 2,169,679 - ABZR87_RS10230 0.74 -0.3 2,169,679 - ABZR87_RS10230 0.74 +0.8 2,169,901 + -0.8 2,169,901 + +0.0 2,169,947 - -0.4 2,169,947 - +0.9 2,170,024 + -0.5 2,170,025 - +0.3 2,170,025 - -1.0 2,170,616 + -2.2 2,170,617 - +0.5 2,170,617 - +0.2 2,170,617 - -0.5 2,170,617 - -0.0 2,170,701 + -1.9 2,170,702 - -0.5 2,170,959 - ABZR87_RS10240 0.20 -0.5 2,170,977 + ABZR87_RS10240 0.22 +0.3 2,171,076 + ABZR87_RS10240 0.30 +0.0 2,171,077 - ABZR87_RS10240 0.30 -0.7 2,171,077 - ABZR87_RS10240 0.30 -0.8 2,171,077 - ABZR87_RS10240 0.30 -1.7 2,171,077 - ABZR87_RS10240 0.30 -2.2 2,171,077 - ABZR87_RS10240 0.30 -1.4
Or see this region's nucleotide sequence