Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01130

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01125 and ABZR87_RS01130 overlap by 1 nucleotidesABZR87_RS01130 and ABZR87_RS01135 are separated by 498 nucleotides ABZR87_RS01125: ABZR87_RS01125 - FAD-linked oxidase C-terminal domain-containing protein, at 233,091 to 234,509 _RS01125 ABZR87_RS01130: ABZR87_RS01130 - LysR substrate-binding domain-containing protein, at 234,509 to 235,399 _RS01130 ABZR87_RS01135: ABZR87_RS01135 - FAD-linked oxidase C-terminal domain-containing protein, at 235,898 to 237,397 _RS01135 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1at 233.589 kb on + strand, within ABZR87_RS01125at 233.688 kb on + strand, within ABZR87_RS01125at 233.688 kb on + strand, within ABZR87_RS01125at 233.688 kb on + strand, within ABZR87_RS01125at 233.760 kb on + strand, within ABZR87_RS01125at 233.760 kb on + strand, within ABZR87_RS01125at 233.760 kb on + strand, within ABZR87_RS01125at 233.761 kb on - strand, within ABZR87_RS01125at 233.761 kb on - strand, within ABZR87_RS01125at 233.910 kb on + strand, within ABZR87_RS01125at 233.910 kb on + strand, within ABZR87_RS01125at 233.910 kb on + strand, within ABZR87_RS01125at 233.911 kb on - strand, within ABZR87_RS01125at 233.911 kb on - strand, within ABZR87_RS01125at 234.020 kb on + strand, within ABZR87_RS01125at 234.020 kb on + strand, within ABZR87_RS01125at 234.020 kb on + strand, within ABZR87_RS01125at 234.020 kb on + strand, within ABZR87_RS01125at 234.021 kb on - strand, within ABZR87_RS01125at 234.021 kb on - strand, within ABZR87_RS01125at 234.093 kb on + strand, within ABZR87_RS01125at 234.093 kb on + strand, within ABZR87_RS01125at 234.093 kb on + strand, within ABZR87_RS01125at 234.094 kb on - strand, within ABZR87_RS01125at 234.094 kb on - strand, within ABZR87_RS01125at 234.507 kb on + strandat 234.507 kb on + strandat 234.507 kb on + strandat 234.507 kb on + strandat 234.508 kb on - strandat 234.508 kb on - strandat 234.722 kb on + strand, within ABZR87_RS01130at 234.723 kb on - strand, within ABZR87_RS01130at 234.723 kb on - strand, within ABZR87_RS01130at 234.872 kb on + strand, within ABZR87_RS01130at 234.872 kb on + strand, within ABZR87_RS01130at 234.873 kb on - strand, within ABZR87_RS01130at 234.873 kb on - strand, within ABZR87_RS01130at 234.969 kb on - strand, within ABZR87_RS01130at 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.317 kb on - strandat 235.317 kb on - strandat 235.317 kb on - strandat 235.317 kb on - strandat 235.317 kb on - strandat 235.319 kb on + strandat 235.319 kb on + strandat 235.319 kb on + strandat 235.319 kb on + strandat 235.319 kb on + strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.397 kb on + strandat 235.398 kb on - strandat 235.398 kb on - strandat 235.398 kb on - strandat 235.473 kb on - strandat 235.473 kb on - strandat 235.540 kb on + strandat 235.540 kb on + strandat 235.540 kb on + strandat 235.540 kb on + strandat 235.540 kb on + strandat 235.541 kb on - strandat 235.541 kb on - strandat 235.541 kb on - strandat 235.541 kb on - strandat 235.541 kb on - strandat 235.541 kb on - strandat 235.541 kb on - strandat 235.541 kb on - strandat 235.541 kb on - strandat 235.614 kb on + strandat 235.614 kb on + strandat 235.614 kb on + strandat 235.614 kb on + strandat 235.614 kb on + strandat 235.614 kb on + strandat 235.614 kb on + strandat 235.614 kb on + strandat 235.615 kb on - strandat 235.615 kb on - strandat 235.615 kb on - strandat 235.615 kb on - strandat 235.615 kb on - strandat 235.615 kb on - strandat 235.615 kb on - strandat 235.615 kb on - strandat 235.615 kb on - strandat 235.615 kb on - strandat 235.634 kb on + strandat 235.697 kb on - strandat 235.697 kb on - strandat 235.815 kb on - strandat 235.843 kb on + strandat 235.843 kb on + strandat 235.843 kb on + strandat 235.844 kb on - strandat 235.844 kb on - strandat 235.844 kb on - strandat 235.844 kb on - strandat 235.844 kb on - strandat 235.844 kb on - strandat 235.845 kb on + strandat 235.845 kb on + strandat 235.845 kb on + strandat 235.845 kb on + strandat 235.845 kb on + strandat 235.845 kb on + strandat 235.845 kb on + strandat 235.845 kb on + strandat 235.846 kb on - strandat 236.027 kb on + strandat 236.028 kb on - strandat 236.028 kb on - strandat 236.249 kb on + strand, within ABZR87_RS01135at 236.249 kb on + strand, within ABZR87_RS01135at 236.250 kb on - strand, within ABZR87_RS01135at 236.324 kb on + strand, within ABZR87_RS01135at 236.324 kb on + strand, within ABZR87_RS01135at 236.325 kb on - strand, within ABZR87_RS01135at 236.325 kb on - strand, within ABZR87_RS01135at 236.325 kb on - strand, within ABZR87_RS01135at 236.325 kb on - strand, within ABZR87_RS01135at 236.327 kb on + strand, within ABZR87_RS01135at 236.328 kb on - strand, within ABZR87_RS01135at 236.328 kb on - strand, within ABZR87_RS01135at 236.328 kb on - strand, within ABZR87_RS01135at 236.328 kb on - strand, within ABZR87_RS01135at 236.328 kb on - strand, within ABZR87_RS01135

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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233,589 + ABZR87_RS01125 0.35 -0.5
233,688 + ABZR87_RS01125 0.42 -0.1
233,688 + ABZR87_RS01125 0.42 +0.1
233,688 + ABZR87_RS01125 0.42 +0.2
233,760 + ABZR87_RS01125 0.47 -0.3
233,760 + ABZR87_RS01125 0.47 -2.1
233,760 + ABZR87_RS01125 0.47 +0.6
233,761 - ABZR87_RS01125 0.47 -0.7
233,761 - ABZR87_RS01125 0.47 -1.0
233,910 + ABZR87_RS01125 0.58 -0.7
233,910 + ABZR87_RS01125 0.58 +0.9
233,910 + ABZR87_RS01125 0.58 +1.2
233,911 - ABZR87_RS01125 0.58 +0.4
233,911 - ABZR87_RS01125 0.58 +0.0
234,020 + ABZR87_RS01125 0.65 -0.3
234,020 + ABZR87_RS01125 0.65 -1.1
234,020 + ABZR87_RS01125 0.65 -0.2
234,020 + ABZR87_RS01125 0.65 -0.1
234,021 - ABZR87_RS01125 0.66 -0.7
234,021 - ABZR87_RS01125 0.66 +0.4
234,093 + ABZR87_RS01125 0.71 +0.2
234,093 + ABZR87_RS01125 0.71 -0.8
234,093 + ABZR87_RS01125 0.71 -0.0
234,094 - ABZR87_RS01125 0.71 -0.1
234,094 - ABZR87_RS01125 0.71 -1.0
234,507 + +0.5
234,507 + +0.0
234,507 + -0.1
234,507 + +0.6
234,508 - +0.7
234,508 - +0.6
234,722 + ABZR87_RS01130 0.24 -0.6
234,723 - ABZR87_RS01130 0.24 +0.5
234,723 - ABZR87_RS01130 0.24 -0.5
234,872 + ABZR87_RS01130 0.41 -1.3
234,872 + ABZR87_RS01130 0.41 -0.6
234,873 - ABZR87_RS01130 0.41 -1.0
234,873 - ABZR87_RS01130 0.41 +1.4
234,969 - ABZR87_RS01130 0.52 +0.5
235,316 + -0.2
235,316 + +0.2
235,316 + +1.0
235,316 + -0.4
235,316 + -0.8
235,316 + -0.1
235,316 + +0.1
235,316 + +0.1
235,317 - -0.1
235,317 - -0.1
235,317 - -0.3
235,317 - -0.0
235,317 - +0.6
235,319 + +0.6
235,319 + -0.1
235,319 + +0.1
235,319 + -1.3
235,319 + +0.4
235,320 - -0.5
235,320 - +0.2
235,320 - -0.6
235,320 - +0.3
235,320 - -0.3
235,320 - +0.8
235,397 + -0.8
235,398 - -0.1
235,398 - +0.4
235,398 - +0.2
235,473 - +0.8
235,473 - +0.4
235,540 + +0.5
235,540 + -0.0
235,540 + -0.8
235,540 + +0.4
235,540 + -1.0
235,541 - -0.5
235,541 - +0.3
235,541 - -0.8
235,541 - -0.1
235,541 - +1.3
235,541 - -0.2
235,541 - +0.8
235,541 - +0.1
235,541 - +0.1
235,614 + -0.4
235,614 + +0.1
235,614 + -1.6
235,614 + +0.4
235,614 + +0.2
235,614 + +0.6
235,614 + -0.6
235,614 + +0.4
235,615 - +0.5
235,615 - +0.0
235,615 - +0.1
235,615 - -0.0
235,615 - +0.1
235,615 - -0.2
235,615 - -0.3
235,615 - -0.7
235,615 - +0.2
235,615 - -0.1
235,634 + -0.5
235,697 - +0.5
235,697 - -2.2
235,815 - -0.3
235,843 + +0.1
235,843 + +0.6
235,843 + +0.1
235,844 - -0.6
235,844 - -0.4
235,844 - +0.6
235,844 - -0.9
235,844 - +0.2
235,844 - -0.2
235,845 + -0.5
235,845 + -0.4
235,845 + +0.2
235,845 + -0.5
235,845 + -0.4
235,845 + +0.4
235,845 + +0.8
235,845 + +0.1
235,846 - +0.5
236,027 + +0.2
236,028 - -0.0
236,028 - -0.3
236,249 + ABZR87_RS01135 0.23 +0.6
236,249 + ABZR87_RS01135 0.23 +0.8
236,250 - ABZR87_RS01135 0.23 +0.0
236,324 + ABZR87_RS01135 0.28 +0.1
236,324 + ABZR87_RS01135 0.28 +1.3
236,325 - ABZR87_RS01135 0.28 +0.2
236,325 - ABZR87_RS01135 0.28 +0.1
236,325 - ABZR87_RS01135 0.28 +0.1
236,325 - ABZR87_RS01135 0.28 -0.1
236,327 + ABZR87_RS01135 0.29 +0.2
236,328 - ABZR87_RS01135 0.29 -0.2
236,328 - ABZR87_RS01135 0.29 -1.1
236,328 - ABZR87_RS01135 0.29 +0.4
236,328 - ABZR87_RS01135 0.29 -0.7
236,328 - ABZR87_RS01135 0.29 -0.5

Or see this region's nucleotide sequence