Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00210 and ABZR87_RS00215 are separated by 125 nucleotides ABZR87_RS00215 and ABZR87_RS00220 are separated by 153 nucleotides
ABZR87_RS00210: ABZR87_RS00210 - nitrite/sulfite reductase, at 40,772 to 42,433
_RS00210
ABZR87_RS00215: ABZR87_RS00215 - sulfite exporter TauE/SafE family protein, at 42,559 to 43,332
_RS00215
ABZR87_RS00220: ABZR87_RS00220 - CysB family HTH-type transcriptional regulator, at 43,486 to 44,427
_RS00220
Position (kb) 42
43
44 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 41.697 kb on + strand, within ABZR87_RS00210 at 41.698 kb on - strand, within ABZR87_RS00210 at 41.698 kb on - strand, within ABZR87_RS00210 at 41.698 kb on - strand, within ABZR87_RS00210 at 41.727 kb on + strand, within ABZR87_RS00210 at 41.727 kb on + strand, within ABZR87_RS00210 at 41.751 kb on + strand, within ABZR87_RS00210 at 41.751 kb on + strand, within ABZR87_RS00210 at 41.752 kb on - strand, within ABZR87_RS00210 at 41.865 kb on + strand, within ABZR87_RS00210 at 41.865 kb on + strand, within ABZR87_RS00210 at 41.866 kb on - strand, within ABZR87_RS00210 at 41.871 kb on + strand, within ABZR87_RS00210 at 41.871 kb on + strand, within ABZR87_RS00210 at 41.872 kb on - strand, within ABZR87_RS00210 at 41.872 kb on - strand, within ABZR87_RS00210 at 41.872 kb on - strand, within ABZR87_RS00210 at 41.872 kb on - strand, within ABZR87_RS00210 at 42.156 kb on + strand, within ABZR87_RS00210 at 42.156 kb on + strand, within ABZR87_RS00210 at 42.156 kb on + strand, within ABZR87_RS00210 at 42.157 kb on - strand, within ABZR87_RS00210 at 42.157 kb on - strand, within ABZR87_RS00210 at 42.157 kb on - strand, within ABZR87_RS00210 at 42.157 kb on - strand, within ABZR87_RS00210 at 42.255 kb on + strand, within ABZR87_RS00210 at 42.256 kb on - strand, within ABZR87_RS00210 at 42.277 kb on + strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.278 kb on - strand at 42.279 kb on + strand at 42.279 kb on + strand at 42.279 kb on + strand at 42.280 kb on - strand at 42.280 kb on - strand at 42.280 kb on - strand at 42.280 kb on - strand at 42.280 kb on - strand at 42.294 kb on + strand at 42.294 kb on + strand at 42.294 kb on + strand at 42.295 kb on - strand at 42.295 kb on - strand at 42.295 kb on - strand at 42.297 kb on + strand at 42.297 kb on + strand at 42.297 kb on + strand at 42.298 kb on - strand at 42.298 kb on - strand at 42.413 kb on + strand at 42.414 kb on + strand at 42.414 kb on + strand at 42.415 kb on - strand at 42.415 kb on - strand at 42.427 kb on + strand at 42.429 kb on + strand at 42.429 kb on + strand at 42.429 kb on + strand at 42.429 kb on + strand at 42.429 kb on + strand at 42.430 kb on - strand at 42.430 kb on - strand at 42.430 kb on - strand at 42.661 kb on - strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.719 kb on + strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.720 kb on - strand, within ABZR87_RS00215 at 42.761 kb on + strand, within ABZR87_RS00215 at 42.761 kb on + strand, within ABZR87_RS00215 at 42.762 kb on - strand, within ABZR87_RS00215 at 42.762 kb on - strand, within ABZR87_RS00215 at 42.806 kb on + strand, within ABZR87_RS00215 at 42.929 kb on + strand, within ABZR87_RS00215 at 43.135 kb on - strand, within ABZR87_RS00215 at 43.234 kb on + strand, within ABZR87_RS00215 at 43.234 kb on + strand, within ABZR87_RS00215 at 43.235 kb on - strand, within ABZR87_RS00215 at 43.235 kb on - strand, within ABZR87_RS00215 at 43.235 kb on - strand, within ABZR87_RS00215 at 43.319 kb on + strand at 43.319 kb on + strand at 43.319 kb on + strand at 43.320 kb on - strand at 43.320 kb on - strand at 43.320 kb on - strand at 43.357 kb on + strand at 43.358 kb on - strand at 43.358 kb on - strand at 43.378 kb on + strand at 43.378 kb on + strand at 43.379 kb on - strand at 43.379 kb on - strand at 43.379 kb on - strand at 43.379 kb on - strand at 43.379 kb on - strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.395 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.424 kb on - strand at 43.425 kb on + strand at 43.426 kb on - strand at 43.440 kb on - strand at 43.443 kb on + strand at 43.444 kb on - strand at 43.470 kb on + strand at 43.470 kb on + strand at 43.471 kb on - strand at 43.471 kb on - strand at 43.566 kb on + strand at 43.587 kb on + strand, within ABZR87_RS00220 at 43.587 kb on + strand, within ABZR87_RS00220 at 43.588 kb on - strand, within ABZR87_RS00220 at 43.588 kb on - strand, within ABZR87_RS00220 at 43.588 kb on - strand, within ABZR87_RS00220 at 43.588 kb on - strand, within ABZR87_RS00220 at 43.588 kb on - strand, within ABZR87_RS00220 at 43.588 kb on - strand, within ABZR87_RS00220 at 43.588 kb on - strand, within ABZR87_RS00220 at 43.744 kb on + strand, within ABZR87_RS00220 at 43.744 kb on + strand, within ABZR87_RS00220 at 43.744 kb on + strand, within ABZR87_RS00220 at 43.744 kb on + strand, within ABZR87_RS00220 at 43.840 kb on + strand, within ABZR87_RS00220 at 43.840 kb on + strand, within ABZR87_RS00220 at 43.841 kb on - strand, within ABZR87_RS00220 at 43.841 kb on - strand, within ABZR87_RS00220 at 43.841 kb on - strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.074 kb on + strand, within ABZR87_RS00220 at 44.075 kb on - strand, within ABZR87_RS00220 at 44.075 kb on - strand, within ABZR87_RS00220 at 44.182 kb on + strand, within ABZR87_RS00220 at 44.182 kb on + strand, within ABZR87_RS00220 at 44.182 kb on + strand, within ABZR87_RS00220 at 44.183 kb on - strand, within ABZR87_RS00220 at 44.183 kb on - strand, within ABZR87_RS00220 at 44.183 kb on - strand, within ABZR87_RS00220 at 44.320 kb on + strand, within ABZR87_RS00220 at 44.320 kb on + strand, within ABZR87_RS00220 at 44.320 kb on + strand, within ABZR87_RS00220
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 41,697 + ABZR87_RS00210 0.56 -0.3 41,698 - ABZR87_RS00210 0.56 -3.9 41,698 - ABZR87_RS00210 0.56 -1.5 41,698 - ABZR87_RS00210 0.56 -2.8 41,727 + ABZR87_RS00210 0.57 -4.2 41,727 + ABZR87_RS00210 0.57 -3.0 41,751 + ABZR87_RS00210 0.59 -3.1 41,751 + ABZR87_RS00210 0.59 -3.4 41,752 - ABZR87_RS00210 0.59 -1.9 41,865 + ABZR87_RS00210 0.66 +0.1 41,865 + ABZR87_RS00210 0.66 -0.7 41,866 - ABZR87_RS00210 0.66 -2.3 41,871 + ABZR87_RS00210 0.66 -2.7 41,871 + ABZR87_RS00210 0.66 -1.8 41,872 - ABZR87_RS00210 0.66 -2.1 41,872 - ABZR87_RS00210 0.66 -1.7 41,872 - ABZR87_RS00210 0.66 -2.7 41,872 - ABZR87_RS00210 0.66 -3.4 42,156 + ABZR87_RS00210 0.83 +0.7 42,156 + ABZR87_RS00210 0.83 -3.9 42,156 + ABZR87_RS00210 0.83 -1.5 42,157 - ABZR87_RS00210 0.83 -2.4 42,157 - ABZR87_RS00210 0.83 -3.1 42,157 - ABZR87_RS00210 0.83 -2.2 42,157 - ABZR87_RS00210 0.83 -3.0 42,255 + ABZR87_RS00210 0.89 -3.0 42,256 - ABZR87_RS00210 0.89 -1.2 42,277 + -1.5 42,278 - +1.2 42,278 - -2.7 42,278 - -3.5 42,278 - -2.3 42,278 - -1.7 42,278 - -1.9 42,278 - -2.1 42,279 + -2.0 42,279 + -2.5 42,279 + -3.3 42,280 - -2.0 42,280 - -2.5 42,280 - -2.2 42,280 - -3.5 42,280 - -2.8 42,294 + -0.1 42,294 + -2.0 42,294 + -2.5 42,295 - -1.7 42,295 - +0.3 42,295 - -3.7 42,297 + -2.6 42,297 + -1.2 42,297 + -1.8 42,298 - -2.2 42,298 - -2.0 42,413 + -2.1 42,414 + -3.1 42,414 + -2.5 42,415 - -3.7 42,415 - -3.0 42,427 + -2.8 42,429 + -2.0 42,429 + -3.5 42,429 + -2.2 42,429 + -1.2 42,429 + -2.0 42,430 - -4.0 42,430 - -3.0 42,430 - -1.7 42,661 - ABZR87_RS00215 0.13 -0.6 42,719 + ABZR87_RS00215 0.21 -3.4 42,719 + ABZR87_RS00215 0.21 -3.8 42,719 + ABZR87_RS00215 0.21 -2.7 42,719 + ABZR87_RS00215 0.21 -2.8 42,719 + ABZR87_RS00215 0.21 -3.0 42,719 + ABZR87_RS00215 0.21 -3.6 42,719 + ABZR87_RS00215 0.21 -4.0 42,719 + ABZR87_RS00215 0.21 -2.1 42,720 - ABZR87_RS00215 0.21 -0.2 42,720 - ABZR87_RS00215 0.21 -0.2 42,720 - ABZR87_RS00215 0.21 +0.1 42,720 - ABZR87_RS00215 0.21 +0.2 42,720 - ABZR87_RS00215 0.21 +1.5 42,761 + ABZR87_RS00215 0.26 -2.8 42,761 + ABZR87_RS00215 0.26 -2.3 42,762 - ABZR87_RS00215 0.26 +0.1 42,762 - ABZR87_RS00215 0.26 -0.6 42,806 + ABZR87_RS00215 0.32 -2.2 42,929 + ABZR87_RS00215 0.48 -1.1 43,135 - ABZR87_RS00215 0.74 +0.3 43,234 + ABZR87_RS00215 0.87 -1.1 43,234 + ABZR87_RS00215 0.87 -3.1 43,235 - ABZR87_RS00215 0.87 -2.4 43,235 - ABZR87_RS00215 0.87 -4.0 43,235 - ABZR87_RS00215 0.87 -1.7 43,319 + -2.9 43,319 + -3.2 43,319 + -2.5 43,320 - -2.7 43,320 - -0.3 43,320 - -1.4 43,357 + -1.2 43,358 - +0.1 43,358 - +0.2 43,378 + -1.6 43,378 + -1.3 43,379 - +0.4 43,379 - -0.2 43,379 - -0.3 43,379 - +0.3 43,379 - +0.9 43,394 + -0.7 43,394 + -3.5 43,395 - -0.8 43,424 - -1.0 43,424 - -0.5 43,424 - -0.6 43,424 - +0.3 43,424 - -1.0 43,424 - -0.3 43,425 + -1.9 43,426 - -0.6 43,440 - +0.8 43,443 + -1.1 43,444 - -0.1 43,470 + -1.1 43,470 + -0.5 43,471 - +0.2 43,471 - -0.2 43,566 + -3.9 43,587 + ABZR87_RS00220 0.11 -2.7 43,587 + ABZR87_RS00220 0.11 -1.9 43,588 - ABZR87_RS00220 0.11 -2.7 43,588 - ABZR87_RS00220 0.11 -2.2 43,588 - ABZR87_RS00220 0.11 -2.2 43,588 - ABZR87_RS00220 0.11 -2.2 43,588 - ABZR87_RS00220 0.11 -2.4 43,588 - ABZR87_RS00220 0.11 -2.3 43,588 - ABZR87_RS00220 0.11 -1.2 43,744 + ABZR87_RS00220 0.27 -1.6 43,744 + ABZR87_RS00220 0.27 -3.0 43,744 + ABZR87_RS00220 0.27 -3.9 43,744 + ABZR87_RS00220 0.27 -1.0 43,840 + ABZR87_RS00220 0.38 -1.1 43,840 + ABZR87_RS00220 0.38 -0.3 43,841 - ABZR87_RS00220 0.38 -1.8 43,841 - ABZR87_RS00220 0.38 -1.8 43,841 - ABZR87_RS00220 0.38 -1.5 44,074 + ABZR87_RS00220 0.62 -2.8 44,074 + ABZR87_RS00220 0.62 -1.1 44,074 + ABZR87_RS00220 0.62 -3.0 44,074 + ABZR87_RS00220 0.62 -1.2 44,074 + ABZR87_RS00220 0.62 -3.8 44,074 + ABZR87_RS00220 0.62 -2.7 44,074 + ABZR87_RS00220 0.62 -3.6 44,074 + ABZR87_RS00220 0.62 -3.0 44,074 + ABZR87_RS00220 0.62 -3.7 44,074 + ABZR87_RS00220 0.62 -2.9 44,075 - ABZR87_RS00220 0.63 -1.9 44,075 - ABZR87_RS00220 0.63 -0.1 44,182 + ABZR87_RS00220 0.74 -2.1 44,182 + ABZR87_RS00220 0.74 -3.7 44,182 + ABZR87_RS00220 0.74 -2.9 44,183 - ABZR87_RS00220 0.74 -3.0 44,183 - ABZR87_RS00220 0.74 -2.3 44,183 - ABZR87_RS00220 0.74 -5.1 44,320 + ABZR87_RS00220 0.89 -3.7 44,320 + ABZR87_RS00220 0.89 -3.3 44,320 + ABZR87_RS00220 0.89 -1.0
Or see this region's nucleotide sequence