Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01149 and SMc01148 are separated by 15 nucleotides SMc01148 and SMc01147 are separated by 16 nucleotides SMc01147 and SMc01146 are separated by 11 nucleotides SMc01146 and SMc01145 are separated by 30 nucleotides
SMc01149: SMc01149 - hypothetical protein, at 402,694 to 403,176
SMc01149
SMc01148: SMc01148 - hypothetical protein, at 403,192 to 404,058
SMc01148
SMc01147: SMc01147 - coproporphyrinogen III oxidase, at 404,075 to 405,256
SMc01147
SMc01146: SMc01146 - deoxyribonucleotide triphosphate pyrophosphatase, at 405,268 to 405,912
SMc01146
SMc01145: SMc01145 - hypothetical protein, at 405,943 to 406,356
SMc01145
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 403.241 kb on + strand at 403.591 kb on + strand, within SMc01148 at 403.591 kb on + strand, within SMc01148 at 403.591 kb on + strand, within SMc01148 at 403.592 kb on - strand, within SMc01148 at 403.592 kb on - strand, within SMc01148 at 403.690 kb on + strand, within SMc01148 at 403.729 kb on + strand, within SMc01148 at 403.729 kb on + strand, within SMc01148 at 403.729 kb on + strand, within SMc01148 at 403.730 kb on - strand, within SMc01148 at 403.730 kb on - strand, within SMc01148 at 403.730 kb on - strand, within SMc01148 at 403.730 kb on - strand, within SMc01148 at 403.730 kb on - strand, within SMc01148 at 403.730 kb on - strand, within SMc01148 at 403.991 kb on - strand at 404.458 kb on - strand, within SMc01147 at 404.617 kb on - strand, within SMc01147 at 404.642 kb on - strand, within SMc01147 at 404.733 kb on + strand, within SMc01147 at 404.733 kb on + strand, within SMc01147 at 404.737 kb on + strand, within SMc01147 at 404.853 kb on - strand, within SMc01147 at 405.198 kb on + strand at 405.199 kb on - strand at 405.199 kb on - strand at 405.266 kb on - strand at 405.266 kb on - strand at 405.419 kb on + strand, within SMc01146 at 405.458 kb on + strand, within SMc01146 at 405.459 kb on - strand, within SMc01146 at 405.459 kb on - strand, within SMc01146 at 405.870 kb on + strand at 405.870 kb on + strand at 405.870 kb on + strand at 405.914 kb on + strand at 405.915 kb on - strand at 405.915 kb on - strand at 405.915 kb on - strand at 406.007 kb on + strand, within SMc01145
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 403,241 + +2.1 403,591 + SMc01148 0.46 +0.8 403,591 + SMc01148 0.46 +0.1 403,591 + SMc01148 0.46 -0.4 403,592 - SMc01148 0.46 -0.2 403,592 - SMc01148 0.46 -0.2 403,690 + SMc01148 0.57 -0.3 403,729 + SMc01148 0.62 -0.7 403,729 + SMc01148 0.62 -1.2 403,729 + SMc01148 0.62 +0.1 403,730 - SMc01148 0.62 +0.7 403,730 - SMc01148 0.62 -0.3 403,730 - SMc01148 0.62 +0.3 403,730 - SMc01148 0.62 +0.8 403,730 - SMc01148 0.62 -0.7 403,730 - SMc01148 0.62 -0.1 403,991 - -1.2 404,458 - SMc01147 0.32 -2.6 404,617 - SMc01147 0.46 -2.4 404,642 - SMc01147 0.48 -2.3 404,733 + SMc01147 0.56 -2.7 404,733 + SMc01147 0.56 -1.8 404,737 + SMc01147 0.56 -1.0 404,853 - SMc01147 0.66 -1.9 405,198 + -1.3 405,199 - -3.5 405,199 - -2.5 405,266 - +0.8 405,266 - -0.7 405,419 + SMc01146 0.23 -1.2 405,458 + SMc01146 0.29 -2.2 405,459 - SMc01146 0.30 +0.1 405,459 - SMc01146 0.30 -0.3 405,870 + -0.7 405,870 + -1.5 405,870 + -2.0 405,914 + -2.0 405,915 - +0.4 405,915 - -1.6 405,915 - -0.2 406,007 + SMc01145 0.15 -0.5
Or see this region's nucleotide sequence