Strain Fitness in Sinorhizobium meliloti 1021 around SMc00064

Experiment: LB, pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00122 and SMc00064 are separated by 120 nucleotidesSMc00064 and SMc00123 are separated by 61 nucleotidesSMc00123 and SMc00065 are separated by 552 nucleotides SMc00122: SMc00122 - penicillin-binding protein, at 1,100,913 to 1,103,147 SMc00122 SMc00064: SMc00064 - hypothetical protein, at 1,103,268 to 1,103,735 SMc00064 SMc00123: SMc00123 - hypothetical protein, at 1,103,797 to 1,104,132 SMc00123 SMc00065: SMc00065 - signal peptide protein, at 1,104,685 to 1,104,936 SMc00065 Position (kb) 1103 1104Strain fitness (log2 ratio) -1 0 1at 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.455 kb on - strand, within SMc00064at 1103.575 kb on - strand, within SMc00064at 1103.575 kb on - strand, within SMc00064at 1103.688 kb on + strand, within SMc00064at 1103.689 kb on - strandat 1103.707 kb on + strandat 1103.708 kb on - strandat 1103.708 kb on - strandat 1103.768 kb on + strandat 1103.769 kb on - strandat 1103.769 kb on - strandat 1104.143 kb on + strandat 1104.143 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
remove
1,103,154 - +0.1
1,103,154 - +0.4
1,103,154 - -0.1
1,103,154 - -0.5
1,103,455 - SMc00064 0.40 +0.4
1,103,575 - SMc00064 0.66 +0.9
1,103,575 - SMc00064 0.66 +0.5
1,103,688 + SMc00064 0.90 -0.0
1,103,689 - -0.1
1,103,707 + +0.2
1,103,708 - +0.3
1,103,708 - +0.1
1,103,768 + -0.1
1,103,769 - -0.3
1,103,769 - +0.0
1,104,143 + +0.1
1,104,143 + -0.5

Or see this region's nucleotide sequence