Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1706 and SMa1711 are separated by 412 nucleotides SMa1711 and SMa1715 are separated by 864 nucleotides
SMa1706: SMa1706 - hypothetical protein, at 962,812 to 963,234
SMa1706
SMa1711: SMa1711 - arginase, at 963,647 to 964,540
SMa1711
SMa1715: SMa1715 - AdeC3 adenine deaminase, at 965,405 to 967,192
SMa1715
Position (kb)
963
964
965 Strain fitness (log2 ratio)
-1
0
1 at 962.678 kb on + strand at 962.727 kb on + strand at 963.111 kb on + strand, within SMa1706 at 963.137 kb on - strand, within SMa1706 at 963.249 kb on + strand at 963.250 kb on - strand at 963.366 kb on + strand at 963.366 kb on + strand at 963.503 kb on + strand at 963.504 kb on - strand at 963.504 kb on - strand at 963.504 kb on - strand at 963.508 kb on + strand at 963.508 kb on + strand at 963.509 kb on - strand at 963.549 kb on - strand at 963.564 kb on - strand at 963.590 kb on - strand at 963.590 kb on - strand at 963.627 kb on - strand at 963.662 kb on + strand at 963.805 kb on + strand, within SMa1711 at 964.033 kb on + strand, within SMa1711 at 964.076 kb on + strand, within SMa1711 at 964.162 kb on + strand, within SMa1711 at 964.163 kb on - strand, within SMa1711 at 964.163 kb on - strand, within SMa1711 at 964.393 kb on - strand, within SMa1711 at 964.455 kb on - strand at 964.506 kb on + strand at 964.806 kb on + strand at 964.806 kb on + strand at 965.137 kb on + strand at 965.137 kb on + strand at 965.138 kb on - strand at 965.214 kb on + strand at 965.292 kb on + strand at 965.331 kb on - strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.337 kb on - strand at 965.337 kb on - strand at 965.337 kb on - strand at 965.337 kb on - strand at 965.337 kb on - strand at 965.382 kb on + strand at 965.471 kb on + strand at 965.471 kb on + strand at 965.472 kb on - strand at 965.472 kb on - strand at 965.521 kb on + strand at 965.522 kb on - strand at 965.522 kb on - strand at 965.524 kb on + strand at 965.524 kb on + strand at 965.524 kb on + strand at 965.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 962,678 + -0.0 962,727 + +0.2 963,111 + SMa1706 0.71 +0.8 963,137 - SMa1706 0.77 -1.4 963,249 + +0.3 963,250 - -0.1 963,366 + +0.2 963,366 + -1.1 963,503 + -0.3 963,504 - -0.0 963,504 - +0.5 963,504 - -0.4 963,508 + -1.2 963,508 + +0.3 963,509 - -0.5 963,549 - +0.3 963,564 - -0.1 963,590 - -0.6 963,590 - -0.3 963,627 - -0.2 963,662 + -0.4 963,805 + SMa1711 0.18 -1.2 964,033 + SMa1711 0.43 -0.2 964,076 + SMa1711 0.48 -0.8 964,162 + SMa1711 0.58 -0.6 964,163 - SMa1711 0.58 -0.5 964,163 - SMa1711 0.58 -1.1 964,393 - SMa1711 0.83 -0.1 964,455 - +0.0 964,506 + +1.1 964,806 + +0.4 964,806 + +0.2 965,137 + +0.4 965,137 + +0.1 965,138 - -0.2 965,214 + +0.1 965,292 + +0.2 965,331 - -1.0 965,336 + -0.1 965,336 + +1.4 965,336 + +0.6 965,336 + -0.6 965,336 + -0.0 965,336 + +0.1 965,337 - +0.3 965,337 - -0.5 965,337 - +0.4 965,337 - -0.5 965,337 - -0.2 965,382 + +0.3 965,471 + +0.3 965,471 + -0.3 965,472 - +0.5 965,472 - +0.7 965,521 + -0.3 965,522 - -1.1 965,522 - +0.3 965,524 + -0.2 965,524 + -0.6 965,524 + +1.7 965,525 - -0.2
Or see this region's nucleotide sequence