Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1668 and SMa1670 are separated by 15 nucleotides SMa1670 and SMa1672 are separated by 563 nucleotides
SMa1668: SMa1668 - ArcD2 arginine/ornithine antiporter, at 935,142 to 936,563
SMa1668
SMa1670: SMa1670 - arginine deiminase, at 936,579 to 937,838
SMa1670
SMa1672: SMa1672 - hypothetical protein, at 938,402 to 938,896
SMa1672
Position (kb) 936
937
938 Strain fitness (log2 ratio) -1
0
1 at 935.790 kb on + strand, within SMa1668 at 935.849 kb on - strand, within SMa1668 at 936.057 kb on + strand, within SMa1668 at 936.058 kb on - strand, within SMa1668 at 936.058 kb on - strand, within SMa1668 at 936.133 kb on + strand, within SMa1668 at 936.241 kb on - strand, within SMa1668 at 936.241 kb on - strand, within SMa1668 at 936.241 kb on - strand, within SMa1668 at 936.241 kb on - strand, within SMa1668 at 936.292 kb on - strand, within SMa1668 at 936.292 kb on - strand, within SMa1668 at 936.351 kb on + strand, within SMa1668 at 936.351 kb on + strand, within SMa1668 at 936.411 kb on + strand, within SMa1668 at 936.412 kb on - strand, within SMa1668 at 936.412 kb on - strand, within SMa1668 at 936.549 kb on + strand at 936.588 kb on - strand at 936.617 kb on - strand at 936.637 kb on + strand at 936.876 kb on - strand, within SMa1670 at 936.876 kb on - strand, within SMa1670 at 936.898 kb on + strand, within SMa1670 at 936.899 kb on - strand, within SMa1670 at 937.044 kb on + strand, within SMa1670 at 937.045 kb on - strand, within SMa1670 at 937.045 kb on - strand, within SMa1670 at 937.074 kb on + strand, within SMa1670 at 937.075 kb on - strand, within SMa1670 at 937.076 kb on + strand, within SMa1670 at 937.129 kb on - strand, within SMa1670 at 937.174 kb on - strand, within SMa1670 at 937.420 kb on + strand, within SMa1670 at 937.421 kb on - strand, within SMa1670 at 937.421 kb on - strand, within SMa1670 at 937.460 kb on + strand, within SMa1670 at 937.461 kb on - strand, within SMa1670 at 937.461 kb on - strand, within SMa1670 at 937.579 kb on + strand, within SMa1670 at 937.624 kb on - strand, within SMa1670 at 937.624 kb on - strand, within SMa1670 at 937.710 kb on + strand, within SMa1670 at 937.710 kb on + strand, within SMa1670 at 937.710 kb on + strand, within SMa1670 at 937.711 kb on - strand, within SMa1670 at 937.718 kb on + strand at 937.719 kb on - strand at 937.719 kb on - strand at 937.719 kb on - strand at 937.727 kb on - strand at 937.814 kb on + strand at 938.171 kb on + strand at 938.172 kb on - strand at 938.565 kb on + strand, within SMa1672 at 938.619 kb on + strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.803 kb on - strand, within SMa1672
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 935,790 + SMa1668 0.46 -0.1 935,849 - SMa1668 0.50 +0.5 936,057 + SMa1668 0.64 -0.4 936,058 - SMa1668 0.64 -0.4 936,058 - SMa1668 0.64 +0.6 936,133 + SMa1668 0.70 -0.1 936,241 - SMa1668 0.77 -0.3 936,241 - SMa1668 0.77 +0.3 936,241 - SMa1668 0.77 -0.4 936,241 - SMa1668 0.77 -0.4 936,292 - SMa1668 0.81 -1.0 936,292 - SMa1668 0.81 -0.2 936,351 + SMa1668 0.85 -0.7 936,351 + SMa1668 0.85 -0.6 936,411 + SMa1668 0.89 +0.7 936,412 - SMa1668 0.89 +0.7 936,412 - SMa1668 0.89 +0.2 936,549 + -0.8 936,588 - +0.7 936,617 - -0.5 936,637 + +0.8 936,876 - SMa1670 0.24 +0.4 936,876 - SMa1670 0.24 -0.3 936,898 + SMa1670 0.25 -0.3 936,899 - SMa1670 0.25 -0.4 937,044 + SMa1670 0.37 -0.2 937,045 - SMa1670 0.37 -0.7 937,045 - SMa1670 0.37 -0.5 937,074 + SMa1670 0.39 +1.3 937,075 - SMa1670 0.39 -1.6 937,076 + SMa1670 0.39 +0.0 937,129 - SMa1670 0.44 -0.1 937,174 - SMa1670 0.47 +0.1 937,420 + SMa1670 0.67 -0.4 937,421 - SMa1670 0.67 -1.1 937,421 - SMa1670 0.67 -0.1 937,460 + SMa1670 0.70 +0.1 937,461 - SMa1670 0.70 +0.1 937,461 - SMa1670 0.70 -0.1 937,579 + SMa1670 0.79 -0.3 937,624 - SMa1670 0.83 +0.2 937,624 - SMa1670 0.83 -0.5 937,710 + SMa1670 0.90 -0.2 937,710 + SMa1670 0.90 -0.5 937,710 + SMa1670 0.90 -1.0 937,711 - SMa1670 0.90 -1.2 937,718 + -0.3 937,719 - +0.4 937,719 - -0.2 937,719 - -0.3 937,727 - +0.5 937,814 + +0.3 938,171 + -0.1 938,172 - -0.2 938,565 + SMa1672 0.33 -0.1 938,619 + SMa1672 0.44 -0.1 938,620 - SMa1672 0.44 -0.1 938,620 - SMa1672 0.44 -0.4 938,800 + SMa1672 0.80 -1.2 938,800 + SMa1672 0.80 +0.4 938,801 - SMa1672 0.81 -0.4 938,801 - SMa1672 0.81 +0.2 938,802 + SMa1672 0.81 +0.1 938,802 + SMa1672 0.81 -0.1 938,802 + SMa1672 0.81 -0.9 938,802 + SMa1672 0.81 +1.5 938,802 + SMa1672 0.81 +0.0 938,803 - SMa1672 0.81 -0.6
Or see this region's nucleotide sequence