Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS29185 and RR42_RS29190 are separated by 174 nucleotides RR42_RS29190 and RR42_RS29195 are separated by 50 nucleotides RR42_RS29195 and RR42_RS29200 are separated by 109 nucleotides RR42_RS29200 and RR42_RS29205 overlap by 4 nucleotides
RR42_RS29185: RR42_RS29185 - potassium transporter Kef, at 1,905,605 to 1,906,075
_RS29185
RR42_RS29190: RR42_RS29190 - isomerase, at 1,906,250 to 1,906,672
_RS29190
RR42_RS29195: RR42_RS29195 - short-chain dehydrogenase, at 1,906,723 to 1,907,508
_RS29195
RR42_RS29200: RR42_RS29200 - lipoprotein, at 1,907,618 to 1,908,157
_RS29200
RR42_RS29205: RR42_RS29205 - hypothetical protein, at 1,908,154 to 1,909,389
_RS29205
Position (kb) 1906
1907
1908 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1905.798 kb on + strand, within RR42_RS29185 at 1905.799 kb on - strand, within RR42_RS29185 at 1905.799 kb on - strand, within RR42_RS29185 at 1905.799 kb on - strand, within RR42_RS29185 at 1905.805 kb on - strand, within RR42_RS29185 at 1906.030 kb on + strand at 1906.127 kb on - strand at 1906.234 kb on + strand at 1906.290 kb on - strand at 1906.290 kb on - strand at 1906.344 kb on + strand, within RR42_RS29190 at 1906.345 kb on - strand, within RR42_RS29190 at 1906.396 kb on + strand, within RR42_RS29190 at 1906.410 kb on + strand, within RR42_RS29190 at 1906.411 kb on - strand, within RR42_RS29190 at 1906.596 kb on + strand, within RR42_RS29190 at 1906.597 kb on - strand, within RR42_RS29190 at 1906.597 kb on - strand, within RR42_RS29190 at 1906.641 kb on + strand at 1906.774 kb on + strand at 1906.953 kb on - strand, within RR42_RS29195 at 1906.985 kb on + strand, within RR42_RS29195 at 1907.057 kb on + strand, within RR42_RS29195 at 1907.057 kb on + strand, within RR42_RS29195 at 1907.058 kb on - strand, within RR42_RS29195 at 1907.058 kb on - strand, within RR42_RS29195 at 1907.135 kb on + strand, within RR42_RS29195 at 1907.138 kb on + strand, within RR42_RS29195 at 1907.138 kb on + strand, within RR42_RS29195 at 1907.139 kb on - strand, within RR42_RS29195 at 1907.707 kb on - strand, within RR42_RS29200 at 1907.707 kb on - strand, within RR42_RS29200 at 1907.707 kb on - strand, within RR42_RS29200 at 1907.733 kb on + strand, within RR42_RS29200 at 1907.733 kb on + strand, within RR42_RS29200 at 1907.734 kb on - strand, within RR42_RS29200 at 1907.734 kb on - strand, within RR42_RS29200 at 1907.734 kb on - strand, within RR42_RS29200 at 1907.734 kb on - strand, within RR42_RS29200 at 1907.766 kb on + strand, within RR42_RS29200 at 1907.767 kb on - strand, within RR42_RS29200 at 1907.899 kb on - strand, within RR42_RS29200 at 1907.899 kb on - strand, within RR42_RS29200 at 1907.918 kb on + strand, within RR42_RS29200 at 1907.954 kb on + strand, within RR42_RS29200 at 1908.101 kb on + strand, within RR42_RS29200 at 1908.112 kb on - strand at 1908.113 kb on + strand at 1908.113 kb on + strand at 1908.114 kb on - strand at 1908.114 kb on - strand at 1908.293 kb on + strand, within RR42_RS29205 at 1908.372 kb on - strand, within RR42_RS29205 at 1908.372 kb on - strand, within RR42_RS29205
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,905,798 + RR42_RS29185 0.41 +0.6 1,905,799 - RR42_RS29185 0.41 -0.2 1,905,799 - RR42_RS29185 0.41 -1.0 1,905,799 - RR42_RS29185 0.41 -0.1 1,905,805 - RR42_RS29185 0.42 +0.4 1,906,030 + +0.0 1,906,127 - -1.7 1,906,234 + +0.5 1,906,290 - +0.8 1,906,290 - -0.6 1,906,344 + RR42_RS29190 0.22 -0.4 1,906,345 - RR42_RS29190 0.22 -0.2 1,906,396 + RR42_RS29190 0.35 -0.5 1,906,410 + RR42_RS29190 0.38 +1.9 1,906,411 - RR42_RS29190 0.38 -0.2 1,906,596 + RR42_RS29190 0.82 +0.2 1,906,597 - RR42_RS29190 0.82 +0.3 1,906,597 - RR42_RS29190 0.82 +0.5 1,906,641 + +0.6 1,906,774 + +0.1 1,906,953 - RR42_RS29195 0.29 -1.6 1,906,985 + RR42_RS29195 0.33 -0.6 1,907,057 + RR42_RS29195 0.42 +0.2 1,907,057 + RR42_RS29195 0.42 +0.7 1,907,058 - RR42_RS29195 0.43 -2.0 1,907,058 - RR42_RS29195 0.43 -0.7 1,907,135 + RR42_RS29195 0.52 -1.0 1,907,138 + RR42_RS29195 0.53 -0.0 1,907,138 + RR42_RS29195 0.53 -0.5 1,907,139 - RR42_RS29195 0.53 -0.5 1,907,707 - RR42_RS29200 0.16 +0.7 1,907,707 - RR42_RS29200 0.16 -0.1 1,907,707 - RR42_RS29200 0.16 +0.4 1,907,733 + RR42_RS29200 0.21 -1.0 1,907,733 + RR42_RS29200 0.21 -0.9 1,907,734 - RR42_RS29200 0.21 +0.0 1,907,734 - RR42_RS29200 0.21 +0.2 1,907,734 - RR42_RS29200 0.21 +0.2 1,907,734 - RR42_RS29200 0.21 +0.2 1,907,766 + RR42_RS29200 0.27 -0.8 1,907,767 - RR42_RS29200 0.28 +0.0 1,907,899 - RR42_RS29200 0.52 +0.0 1,907,899 - RR42_RS29200 0.52 +0.1 1,907,918 + RR42_RS29200 0.56 -0.2 1,907,954 + RR42_RS29200 0.62 +0.4 1,908,101 + RR42_RS29200 0.89 +0.1 1,908,112 - +0.5 1,908,113 + +1.8 1,908,113 + +0.3 1,908,114 - -0.9 1,908,114 - +0.9 1,908,293 + RR42_RS29205 0.11 -0.1 1,908,372 - RR42_RS29205 0.18 -0.9 1,908,372 - RR42_RS29205 0.18 +0.3
Or see this region's nucleotide sequence