Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28060 and RR42_RS28065 overlap by 5 nucleotides RR42_RS28065 and RR42_RS28070 are separated by 35 nucleotides RR42_RS28070 and RR42_RS28075 are separated by 26 nucleotides
RR42_RS28060: RR42_RS28060 - dehydratase, at 1,656,386 to 1,657,624
_RS28060
RR42_RS28065: RR42_RS28065 - ribose-phosphate pyrophosphokinase, at 1,657,620 to 1,658,225
_RS28065
RR42_RS28070: RR42_RS28070 - hypothetical protein, at 1,658,261 to 1,659,022
_RS28070
RR42_RS28075: RR42_RS28075 - phosphonate metabolism protein PhnM, at 1,659,049 to 1,660,245
_RS28075
Position (kb)
1657
1658
1659 Strain fitness (log2 ratio)
-1
0
1 at 1656.684 kb on + strand, within RR42_RS28060 at 1656.697 kb on + strand, within RR42_RS28060 at 1656.902 kb on + strand, within RR42_RS28060 at 1656.902 kb on + strand, within RR42_RS28060 at 1657.076 kb on + strand, within RR42_RS28060 at 1657.911 kb on + strand, within RR42_RS28065 at 1657.912 kb on - strand, within RR42_RS28065 at 1657.967 kb on - strand, within RR42_RS28065 at 1658.179 kb on + strand at 1658.322 kb on + strand at 1658.491 kb on + strand, within RR42_RS28070 at 1658.509 kb on - strand, within RR42_RS28070 at 1658.509 kb on - strand, within RR42_RS28070 at 1658.533 kb on + strand, within RR42_RS28070 at 1658.534 kb on - strand, within RR42_RS28070 at 1658.714 kb on + strand, within RR42_RS28070 at 1658.833 kb on - strand, within RR42_RS28070 at 1658.979 kb on + strand at 1658.979 kb on + strand at 1658.994 kb on + strand at 1658.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,656,684 + RR42_RS28060 0.24 -1.0 1,656,697 + RR42_RS28060 0.25 +0.8 1,656,902 + RR42_RS28060 0.42 +0.6 1,656,902 + RR42_RS28060 0.42 -0.2 1,657,076 + RR42_RS28060 0.56 -0.1 1,657,911 + RR42_RS28065 0.48 -0.1 1,657,912 - RR42_RS28065 0.48 -1.4 1,657,967 - RR42_RS28065 0.57 -0.9 1,658,179 + -0.6 1,658,322 + +0.3 1,658,491 + RR42_RS28070 0.30 -0.1 1,658,509 - RR42_RS28070 0.33 -0.6 1,658,509 - RR42_RS28070 0.33 +0.3 1,658,533 + RR42_RS28070 0.36 +0.8 1,658,534 - RR42_RS28070 0.36 +0.1 1,658,714 + RR42_RS28070 0.59 +0.1 1,658,833 - RR42_RS28070 0.75 -0.5 1,658,979 + -1.2 1,658,979 + +0.3 1,658,994 + -0.5 1,658,995 - -0.2
Or see this region's nucleotide sequence