Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25950

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25945 and RR42_RS25950 are separated by 16 nucleotidesRR42_RS25950 and RR42_RS25955 are separated by 38 nucleotidesRR42_RS25955 and RR42_RS25960 are separated by 359 nucleotides RR42_RS25945: RR42_RS25945 - MFS transporter, at 1,162,687 to 1,164,318 _RS25945 RR42_RS25950: RR42_RS25950 - hypothetical protein, at 1,164,335 to 1,165,504 _RS25950 RR42_RS25955: RR42_RS25955 - transcriptional regulator, at 1,165,543 to 1,165,941 _RS25955 RR42_RS25960: RR42_RS25960 - hypothetical protein, at 1,166,301 to 1,170,614 _RS25960 Position (kb) 1164 1165 1166Strain fitness (log2 ratio) -2 -1 0 1at 1163.389 kb on + strand, within RR42_RS25945at 1163.389 kb on + strand, within RR42_RS25945at 1163.390 kb on - strand, within RR42_RS25945at 1163.659 kb on + strand, within RR42_RS25945at 1163.660 kb on - strand, within RR42_RS25945at 1163.660 kb on - strand, within RR42_RS25945at 1163.885 kb on + strand, within RR42_RS25945at 1164.255 kb on + strandat 1164.255 kb on + strandat 1164.255 kb on + strandat 1164.255 kb on + strandat 1164.256 kb on - strandat 1164.256 kb on - strandat 1164.256 kb on - strandat 1164.579 kb on + strand, within RR42_RS25950at 1164.579 kb on + strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.582 kb on + strand, within RR42_RS25950at 1164.582 kb on + strand, within RR42_RS25950at 1164.735 kb on + strand, within RR42_RS25950at 1164.735 kb on + strand, within RR42_RS25950at 1164.875 kb on + strand, within RR42_RS25950at 1165.218 kb on - strand, within RR42_RS25950at 1165.312 kb on - strand, within RR42_RS25950at 1165.332 kb on + strand, within RR42_RS25950at 1165.332 kb on + strand, within RR42_RS25950at 1165.353 kb on + strand, within RR42_RS25950at 1165.354 kb on - strand, within RR42_RS25950at 1165.354 kb on - strand, within RR42_RS25950at 1165.354 kb on - strand, within RR42_RS25950at 1165.937 kb on - strandat 1165.937 kb on - strandat 1166.011 kb on - strandat 1166.038 kb on + strandat 1166.038 kb on + strandat 1166.039 kb on - strandat 1166.039 kb on - strandat 1166.047 kb on - strandat 1166.047 kb on - strandat 1166.190 kb on - strandat 1166.249 kb on + strandat 1166.251 kb on + strandat 1166.251 kb on + strandat 1166.252 kb on - strandat 1166.252 kb on - strandat 1166.252 kb on - strandat 1166.319 kb on + strandat 1166.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,163,389 + RR42_RS25945 0.43 +0.2
1,163,389 + RR42_RS25945 0.43 -0.6
1,163,390 - RR42_RS25945 0.43 +1.1
1,163,659 + RR42_RS25945 0.60 +0.6
1,163,660 - RR42_RS25945 0.60 +0.6
1,163,660 - RR42_RS25945 0.60 +0.2
1,163,885 + RR42_RS25945 0.73 +0.4
1,164,255 + -0.9
1,164,255 + +0.5
1,164,255 + -0.6
1,164,255 + -0.6
1,164,256 - -1.3
1,164,256 - -0.7
1,164,256 - -0.3
1,164,579 + RR42_RS25950 0.21 +0.1
1,164,579 + RR42_RS25950 0.21 +0.2
1,164,580 - RR42_RS25950 0.21 +1.0
1,164,580 - RR42_RS25950 0.21 -0.1
1,164,580 - RR42_RS25950 0.21 -2.1
1,164,580 - RR42_RS25950 0.21 +0.1
1,164,580 - RR42_RS25950 0.21 -0.5
1,164,580 - RR42_RS25950 0.21 +0.3
1,164,580 - RR42_RS25950 0.21 -0.1
1,164,580 - RR42_RS25950 0.21 -1.6
1,164,580 - RR42_RS25950 0.21 -0.7
1,164,582 + RR42_RS25950 0.21 +0.2
1,164,582 + RR42_RS25950 0.21 +0.3
1,164,735 + RR42_RS25950 0.34 -0.8
1,164,735 + RR42_RS25950 0.34 -0.1
1,164,875 + RR42_RS25950 0.46 +0.4
1,165,218 - RR42_RS25950 0.75 -0.1
1,165,312 - RR42_RS25950 0.84 +1.6
1,165,332 + RR42_RS25950 0.85 +0.1
1,165,332 + RR42_RS25950 0.85 -0.7
1,165,353 + RR42_RS25950 0.87 -2.5
1,165,354 - RR42_RS25950 0.87 +0.2
1,165,354 - RR42_RS25950 0.87 +0.7
1,165,354 - RR42_RS25950 0.87 +0.1
1,165,937 - -0.2
1,165,937 - -0.3
1,166,011 - -0.3
1,166,038 + -0.1
1,166,038 + +0.4
1,166,039 - +0.6
1,166,039 - +1.3
1,166,047 - -0.1
1,166,047 - +0.2
1,166,190 - -0.3
1,166,249 + -0.0
1,166,251 + +0.7
1,166,251 + +0.2
1,166,252 - +0.4
1,166,252 - +0.2
1,166,252 - -0.0
1,166,319 + +0.1
1,166,320 - -0.7

Or see this region's nucleotide sequence