Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24455 and RR42_RS24460 are separated by 438 nucleotides
RR42_RS24455: RR42_RS24455 - hypothetical protein, at 820,402 to 821,430
_RS24455
RR42_RS24460: RR42_RS24460 - hypothetical protein, at 821,869 to 822,363
_RS24460
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 820.931 kb on - strand, within RR42_RS24455 at 820.932 kb on + strand, within RR42_RS24455 at 820.933 kb on - strand, within RR42_RS24455 at 820.972 kb on + strand, within RR42_RS24455 at 821.068 kb on + strand, within RR42_RS24455 at 821.069 kb on - strand, within RR42_RS24455 at 821.069 kb on - strand, within RR42_RS24455 at 821.096 kb on + strand, within RR42_RS24455 at 821.096 kb on + strand, within RR42_RS24455 at 821.097 kb on - strand, within RR42_RS24455 at 821.103 kb on - strand, within RR42_RS24455 at 821.123 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.151 kb on + strand, within RR42_RS24455 at 821.152 kb on - strand, within RR42_RS24455 at 821.152 kb on - strand, within RR42_RS24455 at 821.224 kb on + strand, within RR42_RS24455 at 821.349 kb on + strand at 821.349 kb on + strand at 821.349 kb on + strand at 821.350 kb on - strand at 821.490 kb on - strand at 821.512 kb on + strand at 821.513 kb on - strand at 821.523 kb on + strand at 821.524 kb on - strand at 821.598 kb on + strand at 821.598 kb on + strand at 821.599 kb on - strand at 821.599 kb on - strand at 821.715 kb on + strand at 821.716 kb on - strand at 821.752 kb on - strand at 821.752 kb on - strand at 821.752 kb on - strand at 821.771 kb on - strand at 821.771 kb on - strand at 822.169 kb on + strand, within RR42_RS24460 at 822.185 kb on - strand, within RR42_RS24460 at 822.217 kb on + strand, within RR42_RS24460 at 822.218 kb on - strand, within RR42_RS24460 at 822.320 kb on + strand at 822.354 kb on + strand at 822.363 kb on + strand at 822.364 kb on - strand at 822.407 kb on + strand at 822.407 kb on + strand at 822.408 kb on - strand at 822.408 kb on - strand at 822.408 kb on - strand at 822.408 kb on - strand at 822.408 kb on - strand at 822.426 kb on - strand at 822.584 kb on - strand at 822.808 kb on - strand at 822.808 kb on - strand at 822.914 kb on + strand at 822.944 kb on - strand at 823.041 kb on + strand at 823.188 kb on + strand at 823.188 kb on + strand at 823.189 kb on - strand at 823.189 kb on - strand at 823.343 kb on + strand at 823.343 kb on + strand at 823.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 820,931 - RR42_RS24455 0.51 +1.1 820,932 + RR42_RS24455 0.52 -0.5 820,933 - RR42_RS24455 0.52 +0.2 820,972 + RR42_RS24455 0.55 +0.0 821,068 + RR42_RS24455 0.65 -0.1 821,069 - RR42_RS24455 0.65 -1.2 821,069 - RR42_RS24455 0.65 -0.4 821,096 + RR42_RS24455 0.67 +0.2 821,096 + RR42_RS24455 0.67 -0.4 821,097 - RR42_RS24455 0.68 +3.8 821,103 - RR42_RS24455 0.68 +0.2 821,123 + RR42_RS24455 0.70 +0.8 821,151 + RR42_RS24455 0.73 +0.9 821,151 + RR42_RS24455 0.73 +0.3 821,151 + RR42_RS24455 0.73 -0.1 821,151 + RR42_RS24455 0.73 +0.2 821,151 + RR42_RS24455 0.73 -0.2 821,152 - RR42_RS24455 0.73 +0.7 821,152 - RR42_RS24455 0.73 -0.1 821,224 + RR42_RS24455 0.80 +0.3 821,349 + -0.6 821,349 + -0.0 821,349 + +0.1 821,350 - +0.8 821,490 - -0.6 821,512 + +1.9 821,513 - -0.1 821,523 + -0.2 821,524 - -0.4 821,598 + +0.1 821,598 + +0.4 821,599 - +0.5 821,599 - -0.7 821,715 + +0.5 821,716 - +0.2 821,752 - -0.5 821,752 - +0.5 821,752 - -0.0 821,771 - +0.1 821,771 - -0.5 822,169 + RR42_RS24460 0.61 -0.8 822,185 - RR42_RS24460 0.64 -0.9 822,217 + RR42_RS24460 0.70 -1.0 822,218 - RR42_RS24460 0.71 -1.0 822,320 + -0.2 822,354 + +0.2 822,363 + -2.4 822,364 - -0.7 822,407 + -0.0 822,407 + -0.5 822,408 - +0.7 822,408 - +0.5 822,408 - +1.5 822,408 - -0.4 822,408 - +0.5 822,426 - -0.2 822,584 - +0.1 822,808 - +0.0 822,808 - +0.2 822,914 + -0.4 822,944 - -0.1 823,041 + -0.6 823,188 + +0.3 823,188 + -0.4 823,189 - -0.5 823,189 - -0.2 823,343 + -0.3 823,343 + +0.1 823,344 - -1.2
Or see this region's nucleotide sequence