Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22275 and RR42_RS22280 are separated by 108 nucleotides RR42_RS22280 and RR42_RS22285 are separated by 72 nucleotides RR42_RS22285 and RR42_RS22290 are separated by 123 nucleotides
RR42_RS22275: RR42_RS22275 - hypothetical protein, at 339,648 to 339,914
_RS22275
RR42_RS22280: RR42_RS22280 - cupin, at 340,023 to 340,478
_RS22280
RR42_RS22285: RR42_RS22285 - methionine sulfoxide reductase A, at 340,551 to 341,291
_RS22285
RR42_RS22290: RR42_RS22290 - cytochrome C biogenesis protein, at 341,415 to 343,223
_RS22290
Position (kb) 340
341
342 Strain fitness (log2 ratio) -1
0
1
2 at 339.649 kb on + strand at 339.656 kb on + strand at 339.656 kb on + strand at 339.661 kb on + strand at 339.661 kb on + strand at 339.661 kb on + strand at 339.662 kb on - strand at 339.662 kb on - strand at 339.662 kb on - strand at 339.662 kb on - strand at 339.763 kb on + strand, within RR42_RS22275 at 339.764 kb on - strand, within RR42_RS22275 at 339.825 kb on + strand, within RR42_RS22275 at 339.932 kb on - strand at 339.967 kb on + strand at 339.967 kb on + strand at 339.968 kb on - strand at 340.083 kb on + strand, within RR42_RS22280 at 340.083 kb on + strand, within RR42_RS22280 at 340.120 kb on + strand, within RR42_RS22280 at 340.120 kb on + strand, within RR42_RS22280 at 340.120 kb on + strand, within RR42_RS22280 at 340.120 kb on + strand, within RR42_RS22280 at 340.121 kb on - strand, within RR42_RS22280 at 340.121 kb on - strand, within RR42_RS22280 at 340.121 kb on - strand, within RR42_RS22280 at 340.194 kb on + strand, within RR42_RS22280 at 340.194 kb on + strand, within RR42_RS22280 at 340.194 kb on + strand, within RR42_RS22280 at 340.194 kb on + strand, within RR42_RS22280 at 340.195 kb on - strand, within RR42_RS22280 at 340.195 kb on - strand, within RR42_RS22280 at 340.437 kb on + strand at 340.651 kb on + strand, within RR42_RS22285 at 340.651 kb on + strand, within RR42_RS22285 at 340.652 kb on - strand, within RR42_RS22285 at 340.690 kb on + strand, within RR42_RS22285 at 340.691 kb on - strand, within RR42_RS22285 at 340.779 kb on - strand, within RR42_RS22285 at 340.780 kb on + strand, within RR42_RS22285 at 340.780 kb on + strand, within RR42_RS22285 at 340.781 kb on - strand, within RR42_RS22285 at 340.781 kb on - strand, within RR42_RS22285 at 340.781 kb on - strand, within RR42_RS22285 at 340.835 kb on - strand, within RR42_RS22285 at 340.994 kb on - strand, within RR42_RS22285 at 341.322 kb on + strand at 341.323 kb on - strand at 341.355 kb on + strand at 341.435 kb on - strand at 341.435 kb on - strand at 341.513 kb on - strand at 341.776 kb on + strand, within RR42_RS22290 at 341.776 kb on + strand, within RR42_RS22290 at 341.776 kb on + strand, within RR42_RS22290 at 341.777 kb on - strand, within RR42_RS22290 at 341.777 kb on - strand, within RR42_RS22290 at 341.845 kb on + strand, within RR42_RS22290 at 341.845 kb on + strand, within RR42_RS22290 at 341.845 kb on + strand, within RR42_RS22290 at 342.001 kb on + strand, within RR42_RS22290 at 342.055 kb on + strand, within RR42_RS22290 at 342.100 kb on + strand, within RR42_RS22290 at 342.100 kb on + strand, within RR42_RS22290 at 342.100 kb on + strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.286 kb on + strand, within RR42_RS22290 at 342.287 kb on - strand, within RR42_RS22290
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 339,649 + -0.5 339,656 + +0.4 339,656 + +0.7 339,661 + +0.8 339,661 + +0.5 339,661 + +0.5 339,662 - +0.2 339,662 - -0.2 339,662 - -0.2 339,662 - -0.0 339,763 + RR42_RS22275 0.43 +2.0 339,764 - RR42_RS22275 0.43 -0.4 339,825 + RR42_RS22275 0.66 +0.2 339,932 - -0.2 339,967 + +0.1 339,967 + -1.5 339,968 - +0.8 340,083 + RR42_RS22280 0.13 +0.8 340,083 + RR42_RS22280 0.13 -0.5 340,120 + RR42_RS22280 0.21 +0.5 340,120 + RR42_RS22280 0.21 -0.6 340,120 + RR42_RS22280 0.21 -0.3 340,120 + RR42_RS22280 0.21 -0.5 340,121 - RR42_RS22280 0.21 -0.2 340,121 - RR42_RS22280 0.21 +0.1 340,121 - RR42_RS22280 0.21 -0.7 340,194 + RR42_RS22280 0.38 +0.5 340,194 + RR42_RS22280 0.38 +0.5 340,194 + RR42_RS22280 0.38 +1.0 340,194 + RR42_RS22280 0.38 -0.1 340,195 - RR42_RS22280 0.38 +0.4 340,195 - RR42_RS22280 0.38 +0.6 340,437 + -0.5 340,651 + RR42_RS22285 0.13 +0.4 340,651 + RR42_RS22285 0.13 -0.8 340,652 - RR42_RS22285 0.14 -0.6 340,690 + RR42_RS22285 0.19 -1.6 340,691 - RR42_RS22285 0.19 +1.6 340,779 - RR42_RS22285 0.31 +0.0 340,780 + RR42_RS22285 0.31 -0.6 340,780 + RR42_RS22285 0.31 -0.5 340,781 - RR42_RS22285 0.31 +0.6 340,781 - RR42_RS22285 0.31 -0.7 340,781 - RR42_RS22285 0.31 -0.6 340,835 - RR42_RS22285 0.38 -0.9 340,994 - RR42_RS22285 0.60 -0.7 341,322 + +0.4 341,323 - -0.1 341,355 + -0.7 341,435 - -0.7 341,435 - -1.1 341,513 - +0.0 341,776 + RR42_RS22290 0.20 -0.1 341,776 + RR42_RS22290 0.20 -0.1 341,776 + RR42_RS22290 0.20 +0.5 341,777 - RR42_RS22290 0.20 +0.2 341,777 - RR42_RS22290 0.20 -0.2 341,845 + RR42_RS22290 0.24 -1.0 341,845 + RR42_RS22290 0.24 -1.0 341,845 + RR42_RS22290 0.24 -0.6 342,001 + RR42_RS22290 0.32 +0.5 342,055 + RR42_RS22290 0.35 -1.2 342,100 + RR42_RS22290 0.38 +1.2 342,100 + RR42_RS22290 0.38 -0.0 342,100 + RR42_RS22290 0.38 +0.5 342,254 - RR42_RS22290 0.46 -0.1 342,254 - RR42_RS22290 0.46 +0.2 342,254 - RR42_RS22290 0.46 -0.6 342,254 - RR42_RS22290 0.46 +0.1 342,286 + RR42_RS22290 0.48 +0.6 342,287 - RR42_RS22290 0.48 +0.1
Or see this region's nucleotide sequence