Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15555 and RR42_RS15560 are separated by 84 nucleotides RR42_RS15560 and RR42_RS15565 are separated by 258 nucleotides RR42_RS15565 and RR42_RS15570 are separated by 66 nucleotides RR42_RS15570 and RR42_RS15575 overlap by 8 nucleotides
RR42_RS15555: RR42_RS15555 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 3,359,502 to 3,360,620
_RS15555
RR42_RS15560: RR42_RS15560 - riboflavin synthase subunit alpha, at 3,360,705 to 3,361,334
_RS15560
RR42_RS15565: RR42_RS15565 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 3,361,593 to 3,362,705
_RS15565
RR42_RS15570: RR42_RS15570 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,362,772 to 3,363,275
_RS15570
RR42_RS15575: RR42_RS15575 - N utilization substance protein B, at 3,363,268 to 3,363,789
_RS15575
Position (kb)
3361
3362
3363 Strain fitness (log2 ratio)
-1
0
1
2 at 3360.668 kb on + strand at 3360.668 kb on + strand at 3360.669 kb on - strand at 3361.460 kb on + strand at 3361.465 kb on + strand at 3361.465 kb on + strand at 3361.743 kb on + strand, within RR42_RS15565 at 3362.244 kb on + strand, within RR42_RS15565 at 3362.244 kb on + strand, within RR42_RS15565 at 3362.268 kb on + strand, within RR42_RS15565 at 3362.268 kb on + strand, within RR42_RS15565 at 3362.268 kb on + strand, within RR42_RS15565 at 3362.562 kb on + strand, within RR42_RS15565 at 3362.562 kb on + strand, within RR42_RS15565
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,360,668 + -0.5 3,360,668 + +1.9 3,360,669 - -0.3 3,361,460 + +0.4 3,361,465 + +0.2 3,361,465 + -0.2 3,361,743 + RR42_RS15565 0.13 -0.0 3,362,244 + RR42_RS15565 0.58 +0.4 3,362,244 + RR42_RS15565 0.58 +0.4 3,362,268 + RR42_RS15565 0.61 -0.7 3,362,268 + RR42_RS15565 0.61 +0.2 3,362,268 + RR42_RS15565 0.61 -0.1 3,362,562 + RR42_RS15565 0.87 +0.0 3,362,562 + RR42_RS15565 0.87 +2.5
Or see this region's nucleotide sequence