Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14015 and RR42_RS14020 overlap by 4 nucleotides RR42_RS14020 and RR42_RS14025 overlap by 4 nucleotides RR42_RS14025 and RR42_RS14030 are separated by 30 nucleotides RR42_RS14030 and RR42_RS14035 overlap by 8 nucleotides
RR42_RS14015: RR42_RS14015 - beta-hexosaminidase, at 3,018,161 to 3,019,210
_RS14015
RR42_RS14020: RR42_RS14020 - 4'-phosphopantetheinyl transferase, at 3,019,207 to 3,019,650
_RS14020
RR42_RS14025: RR42_RS14025 - pyridoxine 5'-phosphate synthase, at 3,019,647 to 3,020,429
_RS14025
RR42_RS14030: RR42_RS14030 - DNA recombination protein RecO, at 3,020,460 to 3,021,338
_RS14030
RR42_RS14035: RR42_RS14035 - GTPase Era, at 3,021,331 to 3,022,266
_RS14035
Position (kb)
3019
3020
3021 Strain fitness (log2 ratio)
-2
-1
0
1 at 3018.804 kb on + strand, within RR42_RS14015 at 3018.874 kb on - strand, within RR42_RS14015 at 3018.874 kb on - strand, within RR42_RS14015 at 3019.643 kb on + strand at 3019.644 kb on - strand at 3019.672 kb on + strand at 3020.443 kb on - strand at 3020.457 kb on - strand at 3020.519 kb on - strand at 3020.577 kb on - strand, within RR42_RS14030 at 3020.578 kb on + strand, within RR42_RS14030 at 3020.579 kb on - strand, within RR42_RS14030 at 3020.677 kb on + strand, within RR42_RS14030 at 3020.683 kb on + strand, within RR42_RS14030 at 3020.683 kb on + strand, within RR42_RS14030 at 3020.834 kb on - strand, within RR42_RS14030 at 3020.891 kb on - strand, within RR42_RS14030 at 3021.024 kb on + strand, within RR42_RS14030
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,018,804 + RR42_RS14015 0.61 +0.6 3,018,874 - RR42_RS14015 0.68 -0.2 3,018,874 - RR42_RS14015 0.68 +0.4 3,019,643 + -0.4 3,019,644 - -0.1 3,019,672 + -0.2 3,020,443 - -0.4 3,020,457 - -1.6 3,020,519 - -0.0 3,020,577 - RR42_RS14030 0.13 +1.1 3,020,578 + RR42_RS14030 0.13 +0.3 3,020,579 - RR42_RS14030 0.14 -0.8 3,020,677 + RR42_RS14030 0.25 -0.7 3,020,683 + RR42_RS14030 0.25 -0.6 3,020,683 + RR42_RS14030 0.25 +0.5 3,020,834 - RR42_RS14030 0.43 -1.4 3,020,891 - RR42_RS14030 0.49 -2.0 3,021,024 + RR42_RS14030 0.64 -1.1
Or see this region's nucleotide sequence