Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06100

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06095 and RR42_RS06100 are separated by 160 nucleotidesRR42_RS06100 and RR42_RS06105 overlap by 8 nucleotidesRR42_RS06105 and RR42_RS06110 are separated by 28 nucleotides RR42_RS06095: RR42_RS06095 - hypothetical protein, at 1,337,484 to 1,338,608 _RS06095 RR42_RS06100: RR42_RS06100 - cell division protein FtsX, at 1,338,769 to 1,340,019 _RS06100 RR42_RS06105: RR42_RS06105 - lipoprotein ABC transporter ATP-binding protein, at 1,340,012 to 1,340,761 _RS06105 RR42_RS06110: RR42_RS06110 - DNAase, at 1,340,790 to 1,341,671 _RS06110 Position (kb) 1338 1339 1340 1341Strain fitness (log2 ratio) -3 -2 -1 0 1at 1337.974 kb on + strand, within RR42_RS06095at 1338.050 kb on + strand, within RR42_RS06095at 1338.350 kb on - strand, within RR42_RS06095at 1338.623 kb on - strandat 1338.623 kb on - strandat 1338.650 kb on + strandat 1340.011 kb on + strandat 1340.743 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,337,974 + RR42_RS06095 0.44 -2.8
1,338,050 + RR42_RS06095 0.50 -1.4
1,338,350 - RR42_RS06095 0.77 -1.6
1,338,623 - -0.2
1,338,623 - +0.6
1,338,650 + +0.6
1,340,011 + -1.2
1,340,743 + +1.0

Or see this region's nucleotide sequence