Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00965 and RR42_RS00970 are separated by 12 nucleotides RR42_RS00970 and RR42_RS00975 are separated by 22 nucleotides RR42_RS00975 and RR42_RS00980 are separated by 72 nucleotides RR42_RS00980 and RR42_RS00985 are separated by 58 nucleotides
RR42_RS00965: RR42_RS00965 - Fe-S oxidoreductase, at 229,228 to 229,497
_RS00965
RR42_RS00970: RR42_RS00970 - DSBA oxidoreductase, at 229,510 to 230,199
_RS00970
RR42_RS00975: RR42_RS00975 - MBL fold metallo-hydrolase, at 230,222 to 231,154
_RS00975
RR42_RS00980: RR42_RS00980 - hypothetical protein, at 231,227 to 231,823
_RS00980
RR42_RS00985: RR42_RS00985 - acetyltransferase, at 231,882 to 232,496
_RS00985
Position (kb) 230
231
232 Strain fitness (log2 ratio) -1
0
1 at 229.345 kb on + strand, within RR42_RS00965 at 229.495 kb on + strand at 229.495 kb on + strand at 229.495 kb on + strand at 229.495 kb on + strand at 229.496 kb on - strand at 229.496 kb on - strand at 229.496 kb on - strand at 229.496 kb on - strand at 229.496 kb on - strand at 229.496 kb on - strand at 229.531 kb on + strand at 229.532 kb on - strand at 229.558 kb on + strand at 229.559 kb on - strand at 229.612 kb on + strand, within RR42_RS00970 at 229.613 kb on - strand, within RR42_RS00970 at 229.613 kb on - strand, within RR42_RS00970 at 229.920 kb on - strand, within RR42_RS00970 at 230.006 kb on + strand, within RR42_RS00970 at 230.006 kb on + strand, within RR42_RS00970 at 230.007 kb on - strand, within RR42_RS00970 at 230.011 kb on - strand, within RR42_RS00970 at 230.011 kb on - strand, within RR42_RS00970 at 230.011 kb on - strand, within RR42_RS00970 at 230.213 kb on + strand at 230.213 kb on + strand at 230.213 kb on + strand at 230.214 kb on - strand at 230.234 kb on + strand at 230.234 kb on + strand at 230.234 kb on + strand at 230.234 kb on + strand at 230.234 kb on + strand at 230.235 kb on - strand at 230.235 kb on - strand at 230.235 kb on - strand at 230.235 kb on - strand at 230.345 kb on + strand, within RR42_RS00975 at 230.547 kb on - strand, within RR42_RS00975 at 230.547 kb on - strand, within RR42_RS00975 at 230.900 kb on + strand, within RR42_RS00975 at 230.900 kb on + strand, within RR42_RS00975 at 230.901 kb on - strand, within RR42_RS00975 at 231.141 kb on - strand at 231.141 kb on - strand at 231.392 kb on + strand, within RR42_RS00980 at 231.392 kb on + strand, within RR42_RS00980 at 231.392 kb on + strand, within RR42_RS00980 at 231.392 kb on + strand, within RR42_RS00980 at 231.393 kb on - strand, within RR42_RS00980 at 231.393 kb on - strand, within RR42_RS00980 at 231.393 kb on - strand, within RR42_RS00980 at 231.393 kb on - strand, within RR42_RS00980 at 231.470 kb on + strand, within RR42_RS00980 at 231.979 kb on + strand, within RR42_RS00985 at 232.011 kb on + strand, within RR42_RS00985 at 232.011 kb on + strand, within RR42_RS00985 at 232.011 kb on + strand, within RR42_RS00985 at 232.011 kb on + strand, within RR42_RS00985 at 232.013 kb on + strand, within RR42_RS00985 at 232.014 kb on - strand, within RR42_RS00985 at 232.014 kb on - strand, within RR42_RS00985 at 232.077 kb on + strand, within RR42_RS00985 at 232.078 kb on - strand, within RR42_RS00985 at 232.078 kb on - strand, within RR42_RS00985 at 232.091 kb on - strand, within RR42_RS00985 at 232.116 kb on + strand, within RR42_RS00985 at 232.116 kb on + strand, within RR42_RS00985 at 232.116 kb on + strand, within RR42_RS00985 at 232.116 kb on + strand, within RR42_RS00985 at 232.117 kb on - strand, within RR42_RS00985 at 232.152 kb on + strand, within RR42_RS00985 at 232.153 kb on - strand, within RR42_RS00985
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 229,345 + RR42_RS00965 0.43 -0.3 229,495 + +0.2 229,495 + -0.1 229,495 + +1.3 229,495 + +1.3 229,496 - -0.3 229,496 - -0.3 229,496 - +0.8 229,496 - +0.0 229,496 - +0.4 229,496 - +0.2 229,531 + -0.3 229,532 - +0.1 229,558 + +1.1 229,559 - +0.1 229,612 + RR42_RS00970 0.15 -0.1 229,613 - RR42_RS00970 0.15 +0.2 229,613 - RR42_RS00970 0.15 +0.4 229,920 - RR42_RS00970 0.59 +0.0 230,006 + RR42_RS00970 0.72 +1.0 230,006 + RR42_RS00970 0.72 +0.2 230,007 - RR42_RS00970 0.72 +0.0 230,011 - RR42_RS00970 0.73 +0.0 230,011 - RR42_RS00970 0.73 +0.5 230,011 - RR42_RS00970 0.73 +0.0 230,213 + -0.2 230,213 + -0.3 230,213 + +0.8 230,214 - -0.1 230,234 + -0.3 230,234 + -0.7 230,234 + +0.2 230,234 + +0.5 230,234 + +1.2 230,235 - +0.6 230,235 - -0.4 230,235 - -0.5 230,235 - +0.8 230,345 + RR42_RS00975 0.13 +0.0 230,547 - RR42_RS00975 0.35 +0.6 230,547 - RR42_RS00975 0.35 +0.6 230,900 + RR42_RS00975 0.73 +1.2 230,900 + RR42_RS00975 0.73 +0.0 230,901 - RR42_RS00975 0.73 -0.7 231,141 - +0.0 231,141 - -0.4 231,392 + RR42_RS00980 0.28 -1.4 231,392 + RR42_RS00980 0.28 -0.3 231,392 + RR42_RS00980 0.28 -0.0 231,392 + RR42_RS00980 0.28 -1.0 231,393 - RR42_RS00980 0.28 -1.2 231,393 - RR42_RS00980 0.28 +0.8 231,393 - RR42_RS00980 0.28 -0.3 231,393 - RR42_RS00980 0.28 +0.2 231,470 + RR42_RS00980 0.41 +0.5 231,979 + RR42_RS00985 0.16 -0.9 232,011 + RR42_RS00985 0.21 -1.1 232,011 + RR42_RS00985 0.21 -1.1 232,011 + RR42_RS00985 0.21 -0.0 232,011 + RR42_RS00985 0.21 +0.8 232,013 + RR42_RS00985 0.21 +0.7 232,014 - RR42_RS00985 0.21 +0.9 232,014 - RR42_RS00985 0.21 +0.2 232,077 + RR42_RS00985 0.32 -0.1 232,078 - RR42_RS00985 0.32 +0.6 232,078 - RR42_RS00985 0.32 +0.7 232,091 - RR42_RS00985 0.34 -0.1 232,116 + RR42_RS00985 0.38 -0.7 232,116 + RR42_RS00985 0.38 -0.6 232,116 + RR42_RS00985 0.38 +0.0 232,116 + RR42_RS00985 0.38 -0.0 232,117 - RR42_RS00985 0.38 -0.7 232,152 + RR42_RS00985 0.44 -1.0 232,153 - RR42_RS00985 0.44 +1.0
Or see this region's nucleotide sequence