Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00315

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00305 and RR42_RS00310 are separated by 137 nucleotidesRR42_RS00310 and RR42_RS00315 are separated by 43 nucleotidesRR42_RS00315 and RR42_RS00320 are separated by 256 nucleotides RR42_RS00305: RR42_RS00305 - hypothetical protein, at 87,009 to 88,082 _RS00305 RR42_RS00310: RR42_RS00310 - TetR family transcriptional regulator, at 88,220 to 88,888 _RS00310 RR42_RS00315: RR42_RS00315 - iron-binding protein, at 88,932 to 89,579 _RS00315 RR42_RS00320: RR42_RS00320 - histidine kinase, at 89,836 to 90,285 _RS00320 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1at 87.955 kb on + strand, within RR42_RS00305at 87.956 kb on - strand, within RR42_RS00305at 88.060 kb on - strandat 88.060 kb on - strandat 88.232 kb on + strandat 88.233 kb on - strandat 88.355 kb on + strand, within RR42_RS00310at 88.356 kb on - strand, within RR42_RS00310at 88.356 kb on - strand, within RR42_RS00310at 88.457 kb on + strand, within RR42_RS00310at 88.457 kb on + strand, within RR42_RS00310at 88.457 kb on + strand, within RR42_RS00310at 88.491 kb on - strand, within RR42_RS00310at 88.491 kb on - strand, within RR42_RS00310at 88.491 kb on - strand, within RR42_RS00310at 88.704 kb on - strand, within RR42_RS00310at 88.704 kb on - strand, within RR42_RS00310at 88.704 kb on - strand, within RR42_RS00310at 88.704 kb on - strand, within RR42_RS00310at 88.916 kb on - strandat 88.925 kb on - strandat 88.933 kb on + strandat 88.933 kb on + strandat 88.933 kb on + strandat 88.934 kb on - strandat 88.934 kb on - strandat 88.935 kb on + strandat 88.935 kb on + strandat 88.935 kb on + strandat 88.936 kb on - strandat 88.936 kb on - strandat 89.117 kb on + strand, within RR42_RS00315at 89.117 kb on + strand, within RR42_RS00315at 89.118 kb on - strand, within RR42_RS00315at 89.121 kb on + strand, within RR42_RS00315at 89.121 kb on + strand, within RR42_RS00315at 89.467 kb on - strand, within RR42_RS00315at 89.467 kb on - strand, within RR42_RS00315at 89.629 kb on + strandat 89.630 kb on - strandat 89.630 kb on - strandat 89.631 kb on + strandat 89.631 kb on + strandat 89.632 kb on - strandat 89.681 kb on + strandat 89.682 kb on - strandat 89.682 kb on - strandat 89.707 kb on + strandat 89.708 kb on - strandat 89.728 kb on + strandat 89.728 kb on + strandat 89.729 kb on - strandat 89.729 kb on - strandat 89.729 kb on - strandat 89.729 kb on - strandat 89.729 kb on - strandat 89.881 kb on - strand, within RR42_RS00320at 89.881 kb on - strand, within RR42_RS00320at 89.881 kb on - strand, within RR42_RS00320at 89.881 kb on - strand, within RR42_RS00320at 89.881 kb on - strand, within RR42_RS00320at 89.884 kb on + strand, within RR42_RS00320at 89.884 kb on + strand, within RR42_RS00320at 89.884 kb on + strand, within RR42_RS00320at 89.884 kb on + strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.911 kb on + strand, within RR42_RS00320at 89.911 kb on + strand, within RR42_RS00320at 89.911 kb on + strand, within RR42_RS00320at 89.912 kb on - strand, within RR42_RS00320at 89.912 kb on - strand, within RR42_RS00320at 89.912 kb on - strand, within RR42_RS00320at 90.004 kb on + strand, within RR42_RS00320at 90.005 kb on - strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.083 kb on - strand, within RR42_RS00320at 90.083 kb on - strand, within RR42_RS00320at 90.083 kb on - strand, within RR42_RS00320at 90.102 kb on + strand, within RR42_RS00320at 90.103 kb on - strand, within RR42_RS00320at 90.103 kb on - strand, within RR42_RS00320at 90.211 kb on - strand, within RR42_RS00320at 90.211 kb on - strand, within RR42_RS00320at 90.213 kb on + strand, within RR42_RS00320at 90.213 kb on + strand, within RR42_RS00320at 90.214 kb on - strand, within RR42_RS00320at 90.253 kb on + strandat 90.253 kb on + strandat 90.254 kb on - strandat 90.254 kb on - strandat 90.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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87,955 + RR42_RS00305 0.88 -0.3
87,956 - RR42_RS00305 0.88 +0.0
88,060 - -0.7
88,060 - -0.1
88,232 + -0.0
88,233 - +0.0
88,355 + RR42_RS00310 0.20 +0.1
88,356 - RR42_RS00310 0.20 -0.5
88,356 - RR42_RS00310 0.20 +1.6
88,457 + RR42_RS00310 0.35 +0.0
88,457 + RR42_RS00310 0.35 +0.1
88,457 + RR42_RS00310 0.35 +1.1
88,491 - RR42_RS00310 0.41 -0.1
88,491 - RR42_RS00310 0.41 +0.1
88,491 - RR42_RS00310 0.41 -0.7
88,704 - RR42_RS00310 0.72 -0.5
88,704 - RR42_RS00310 0.72 +0.9
88,704 - RR42_RS00310 0.72 -0.5
88,704 - RR42_RS00310 0.72 -0.4
88,916 - +1.5
88,925 - +0.2
88,933 + +0.3
88,933 + +1.0
88,933 + -0.2
88,934 - -0.7
88,934 - +0.3
88,935 + +0.1
88,935 + -0.2
88,935 + -0.5
88,936 - -0.7
88,936 - +0.1
89,117 + RR42_RS00315 0.29 -0.8
89,117 + RR42_RS00315 0.29 -0.6
89,118 - RR42_RS00315 0.29 -1.1
89,121 + RR42_RS00315 0.29 -0.8
89,121 + RR42_RS00315 0.29 -0.1
89,467 - RR42_RS00315 0.83 -1.8
89,467 - RR42_RS00315 0.83 -1.6
89,629 + +0.5
89,630 - +0.8
89,630 - +0.5
89,631 + +0.6
89,631 + +0.1
89,632 - +0.6
89,681 + +0.1
89,682 - -1.3
89,682 - -0.2
89,707 + +0.1
89,708 - -0.4
89,728 + +1.1
89,728 + -0.5
89,729 - -0.3
89,729 - -0.0
89,729 - +0.0
89,729 - -0.1
89,729 - -0.1
89,881 - RR42_RS00320 0.10 -1.8
89,881 - RR42_RS00320 0.10 +0.7
89,881 - RR42_RS00320 0.10 +0.7
89,881 - RR42_RS00320 0.10 +0.7
89,881 - RR42_RS00320 0.10 +0.0
89,884 + RR42_RS00320 0.11 +0.2
89,884 + RR42_RS00320 0.11 -0.9
89,884 + RR42_RS00320 0.11 -0.7
89,884 + RR42_RS00320 0.11 +0.7
89,885 - RR42_RS00320 0.11 -1.5
89,885 - RR42_RS00320 0.11 +0.7
89,885 - RR42_RS00320 0.11 -0.5
89,885 - RR42_RS00320 0.11 +0.4
89,885 - RR42_RS00320 0.11 +1.7
89,885 - RR42_RS00320 0.11 -0.2
89,885 - RR42_RS00320 0.11 +0.4
89,885 - RR42_RS00320 0.11 -0.8
89,911 + RR42_RS00320 0.17 -1.5
89,911 + RR42_RS00320 0.17 -0.6
89,911 + RR42_RS00320 0.17 -1.1
89,912 - RR42_RS00320 0.17 -0.3
89,912 - RR42_RS00320 0.17 +0.1
89,912 - RR42_RS00320 0.17 -0.5
90,004 + RR42_RS00320 0.37 +0.3
90,005 - RR42_RS00320 0.38 -1.2
90,082 + RR42_RS00320 0.55 -0.4
90,082 + RR42_RS00320 0.55 -0.8
90,082 + RR42_RS00320 0.55 +0.5
90,082 + RR42_RS00320 0.55 -0.0
90,082 + RR42_RS00320 0.55 -0.7
90,082 + RR42_RS00320 0.55 +0.4
90,082 + RR42_RS00320 0.55 -0.1
90,082 + RR42_RS00320 0.55 -1.3
90,083 - RR42_RS00320 0.55 -0.4
90,083 - RR42_RS00320 0.55 +0.5
90,083 - RR42_RS00320 0.55 +0.7
90,102 + RR42_RS00320 0.59 +1.5
90,103 - RR42_RS00320 0.59 -0.4
90,103 - RR42_RS00320 0.59 +0.1
90,211 - RR42_RS00320 0.83 -1.0
90,211 - RR42_RS00320 0.83 -0.1
90,213 + RR42_RS00320 0.84 +1.1
90,213 + RR42_RS00320 0.84 +0.7
90,214 - RR42_RS00320 0.84 +0.5
90,253 + +0.5
90,253 + +0.3
90,254 - -0.1
90,254 - +0.7
90,254 - +0.5

Or see this region's nucleotide sequence