Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08280

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE
1,524,122	+		MMJJ_RS08275	0.30	-0.5
1,524,123	-		MMJJ_RS08275	0.30	-0.2
1,524,141	-		MMJJ_RS08275	0.31	-0.8
1,524,141	-		MMJJ_RS08275	0.31	+1.1
1,524,141	-		MMJJ_RS08275	0.31	-0.2
1,524,141	-		MMJJ_RS08275	0.31	+0.2
1,524,141	-		MMJJ_RS08275	0.31	+0.3
1,524,142	+		MMJJ_RS08275	0.31	+0.2
1,524,142	+		MMJJ_RS08275	0.31	+1.0
1,524,142	+		MMJJ_RS08275	0.31	+0.4
1,524,142	+		MMJJ_RS08275	0.31	+0.0
1,524,142	+		MMJJ_RS08275	0.31	-1.4
1,524,143	-		MMJJ_RS08275	0.32	+0.5
1,524,143	-		MMJJ_RS08275	0.32	-0.5
1,524,143	-		MMJJ_RS08275	0.32	-0.2
1,524,143	-		MMJJ_RS08275	0.32	-0.2
1,524,144	+		MMJJ_RS08275	0.32	-0.4
1,524,144	+		MMJJ_RS08275	0.32	+0.6
1,524,144	+		MMJJ_RS08275	0.32	-0.6
1,524,144	+		MMJJ_RS08275	0.32	+0.7
1,524,144	+		MMJJ_RS08275	0.32	+0.2
1,524,145	-		MMJJ_RS08275	0.32	-0.9
1,524,145	-		MMJJ_RS08275	0.32	-1.5
1,524,145	-		MMJJ_RS08275	0.32	+0.0
1,524,146	+		MMJJ_RS08275	0.32	-0.5
1,524,146	+		MMJJ_RS08275	0.32	+0.3
1,524,146	+		MMJJ_RS08275	0.32	+0.2
1,524,212	+		MMJJ_RS08275	0.38	+1.0
1,524,212	+		MMJJ_RS08275	0.38	-0.0
1,524,222	-		MMJJ_RS08275	0.38	-0.6
1,524,222	-		MMJJ_RS08275	0.38	+0.9
1,524,223	+		MMJJ_RS08275	0.39	+0.4
1,524,229	-		MMJJ_RS08275	0.39	+0.3
1,524,230	+		MMJJ_RS08275	0.39	-0.3
1,524,230	+		MMJJ_RS08275	0.39	-0.4
1,524,269	-		MMJJ_RS08275	0.43	+0.2
1,524,269	-		MMJJ_RS08275	0.43	-0.3
1,524,269	-		MMJJ_RS08275	0.43	+0.1
1,524,269	-		MMJJ_RS08275	0.43	-0.3
1,524,269	-		MMJJ_RS08275	0.43	+0.0
1,524,269	-		MMJJ_RS08275	0.43	-0.8
1,524,270	+		MMJJ_RS08275	0.43	-0.2
1,524,270	+		MMJJ_RS08275	0.43	-1.5
1,524,270	+		MMJJ_RS08275	0.43	-0.5
1,524,270	+		MMJJ_RS08275	0.43	+0.2
1,524,271	-		MMJJ_RS08275	0.43	+0.0
1,524,271	-		MMJJ_RS08275	0.43	-0.1
1,524,271	-		MMJJ_RS08275	0.43	-1.3
1,524,271	-		MMJJ_RS08275	0.43	+0.4
1,524,271	-		MMJJ_RS08275	0.43	+0.3
1,524,271	-		MMJJ_RS08275	0.43	-0.2
1,524,271	-		MMJJ_RS08275	0.43	+1.1
1,524,271	-		MMJJ_RS08275	0.43	+0.3
1,524,272	+		MMJJ_RS08275	0.43	+0.0
1,524,272	+		MMJJ_RS08275	0.43	-0.4
1,524,272	+		MMJJ_RS08275	0.43	+0.5
1,524,272	+		MMJJ_RS08275	0.43	+0.0
1,524,272	+		MMJJ_RS08275	0.43	+0.1
1,524,272	+		MMJJ_RS08275	0.43	-1.4
1,524,272	+		MMJJ_RS08275	0.43	-0.4
1,524,272	+		MMJJ_RS08275	0.43	-0.7
1,524,310	+		MMJJ_RS08275	0.46	-0.8
1,524,318	-		MMJJ_RS08275	0.47	-0.2
1,524,319	+		MMJJ_RS08275	0.47	-0.8
1,524,350	+		MMJJ_RS08275	0.50	-0.2
1,524,373	+		MMJJ_RS08275	0.52	-0.6
1,524,391	-		MMJJ_RS08275	0.53	+1.3
1,524,391	-		MMJJ_RS08275	0.53	+0.2
1,524,391	-		MMJJ_RS08275	0.53	+0.1
1,524,392	+				-0.2
1,524,396	-		MMJJ_RS08275	0.54	+0.1
1,524,443	-		MMJJ_RS08275	0.58	+0.5
1,524,444	+		MMJJ_RS08275	0.58	+0.5
1,524,484	+		MMJJ_RS08275	0.61	-0.6
1,524,521	+		MMJJ_RS08275	0.65	+0.1
1,524,544	-		MMJJ_RS08275	0.67	+0.3
1,524,547	+		MMJJ_RS08275	0.67	+0.9
1,524,559	-		MMJJ_RS08275	0.68	+0.0
1,524,559	-		MMJJ_RS08275	0.68	-1.3
1,524,580	+		MMJJ_RS08275	0.70	-0.9
1,524,588	-		MMJJ_RS08275	0.71	+0.2
1,524,588	-		MMJJ_RS08275	0.71	-0.3
1,524,588	-		MMJJ_RS08275	0.71	-1.2
1,524,588	-		MMJJ_RS08275	0.71	+0.2
1,524,592	-		MMJJ_RS08275	0.71	+0.1
1,524,592	-		MMJJ_RS08275	0.71	+0.1
1,524,593	+		MMJJ_RS08275	0.71	-0.2
1,524,626	-		MMJJ_RS08275	0.74	-0.6
1,524,627	+		MMJJ_RS08275	0.74	-0.2
1,524,644	-		MMJJ_RS08275	0.75	+0.4
1,524,663	-		MMJJ_RS08275	0.77	+0.6
1,524,698	+		MMJJ_RS08275	0.80	+0.0
1,524,702	-		MMJJ_RS08275	0.80	+0.1
1,524,702	-		MMJJ_RS08275	0.80	-1.6
1,524,703	+		MMJJ_RS08275	0.81	+0.2
1,524,703	+		MMJJ_RS08275	0.81	-0.9
1,524,703	+		MMJJ_RS08275	0.81	-1.4
1,524,703	+		MMJJ_RS08275	0.81	-0.3
1,524,719	-		MMJJ_RS08275	0.82	+1.3
1,524,719	-		MMJJ_RS08275	0.82	+0.4
1,524,719	-		MMJJ_RS08275	0.82	-0.7
1,524,719	-		MMJJ_RS08275	0.82	+0.9
1,524,720	+		MMJJ_RS08275	0.82	+0.2
1,524,733	-		MMJJ_RS08275	0.83	-0.1
1,524,733	-		MMJJ_RS08275	0.83	+0.6
1,524,824	+				+0.1
1,524,937	+				-1.2
1,524,940	-				+0.7
1,524,968	-				-0.4
1,524,968	-				-0.1
1,524,982	-				+0.2
1,524,982	-				+0.2
1,524,982	-				+0.0
1,524,983	+				-0.9
1,524,983	+				-0.1
1,525,000	+				+0.1
1,525,065	-				+0.0
1,525,065	-				-1.1
1,525,065	-				+0.1
1,525,066	+				+0.6
1,525,067	-				-0.1
1,525,068	+				+1.0
1,525,110	-				-0.6
1,525,111	+				+0.3
1,525,111	+				+0.2
1,525,111	+				+1.8
1,525,111	+				+0.8
1,525,111	+				-0.0
1,525,112	-				-0.1
1,525,113	+				+0.6
1,525,113	+				+0.3
1,525,113	+				+1.8
1,525,117	+				+0.8
1,525,120	-				+0.5
1,525,120	-				+0.0
1,525,121	+				-0.8
1,525,126	-				-0.7
1,525,130	-				+0.3
1,525,131	+				+0.7
1,525,197	-				+0.6
1,525,220	-				+0.2
1,525,234	+				-1.9
1,525,318	-		MMJJ_RS08280	0.12	-1.0
1,525,318	-		MMJJ_RS08280	0.12	-0.1
1,525,322	-		MMJJ_RS08280	0.12	+0.8
1,525,322	-		MMJJ_RS08280	0.12	-0.4
1,525,322	-		MMJJ_RS08280	0.12	+1.1
1,525,322	-		MMJJ_RS08280	0.12	+1.0
1,525,322	-		MMJJ_RS08280	0.12	-2.0
1,525,322	-		MMJJ_RS08280	0.12	+0.2
1,525,322	-		MMJJ_RS08280	0.12	+0.7
1,525,322	-		MMJJ_RS08280	0.12	-0.3
1,525,322	-		MMJJ_RS08280	0.12	-0.4
1,525,322	-		MMJJ_RS08280	0.12	+0.2
1,525,323	+		MMJJ_RS08280	0.12	-3.0
1,525,323	+		MMJJ_RS08280	0.12	+0.3
1,525,323	+		MMJJ_RS08280	0.12	-0.1
1,525,323	+		MMJJ_RS08280	0.12	+0.4
1,525,323	+		MMJJ_RS08280	0.12	+0.0
1,525,372	+		MMJJ_RS08280	0.15	-0.4
1,525,380	-				-1.2
1,525,414	-		MMJJ_RS08280	0.17	-0.4
1,525,414	-		MMJJ_RS08280	0.17	+0.7
1,525,415	+		MMJJ_RS08280	0.17	+0.9
1,525,438	-		MMJJ_RS08280	0.18	+1.3
1,525,438	-		MMJJ_RS08280	0.18	-0.3
1,525,443	+		MMJJ_RS08280	0.19	-0.0
1,525,457	-		MMJJ_RS08280	0.19	+0.3
1,525,458	+		MMJJ_RS08280	0.20	-0.4
1,525,459	-		MMJJ_RS08280	0.20	+0.5
1,525,459	-		MMJJ_RS08280	0.20	+0.3
1,525,460	+		MMJJ_RS08280	0.20	+0.9
1,525,460	+		MMJJ_RS08280	0.20	-0.7
1,525,460	+		MMJJ_RS08280	0.20	-0.1
1,525,462	-		MMJJ_RS08280	0.20	+0.3
1,525,463	+		MMJJ_RS08280	0.20	+0.0
1,525,475	+		MMJJ_RS08280	0.20	+0.2
1,525,524	+		MMJJ_RS08280	0.23	-0.3
1,525,582	+		MMJJ_RS08280	0.27	+0.6
1,525,591	-		MMJJ_RS08280	0.27	+0.3
1,525,596	-		MMJJ_RS08280	0.27	+0.1
1,525,597	+		MMJJ_RS08280	0.27	+1.0
1,525,621	-		MMJJ_RS08280	0.29	-0.7
1,525,622	+		MMJJ_RS08280	0.29	-0.6
1,525,625	-		MMJJ_RS08280	0.29	+0.6
1,525,630	-		MMJJ_RS08280	0.29	+0.4
1,525,748	-		MMJJ_RS08280	0.36	+1.1
1,525,748	-		MMJJ_RS08280	0.36	+0.6
1,525,777	-		MMJJ_RS08280	0.38	-0.1
1,525,789	-		MMJJ_RS08280	0.38	+0.1
1,525,790	+		MMJJ_RS08280	0.38	+0.2
1,525,996	+		MMJJ_RS08280	0.50	+0.1
1,525,996	+		MMJJ_RS08280	0.50	+0.1
1,526,039	+		MMJJ_RS08280	0.53	-0.1
1,526,099	-		MMJJ_RS08280	0.56	+0.3
1,526,109	+		MMJJ_RS08280	0.57	+0.3
1,526,114	+		MMJJ_RS08280	0.57	+0.2
1,526,130	+		MMJJ_RS08280	0.58	+0.5
1,526,213	-		MMJJ_RS08280	0.62	-0.1
1,526,255	-		MMJJ_RS08280	0.65	+0.4
1,526,255	-		MMJJ_RS08280	0.65	+0.4
1,526,259	-		MMJJ_RS08280	0.65	-0.9
1,526,260	+		MMJJ_RS08280	0.65	+0.6
1,526,282	-		MMJJ_RS08280	0.66	-0.2
1,526,283	+		MMJJ_RS08280	0.66	-0.0
1,526,400	-		MMJJ_RS08280	0.73	+0.3
1,526,405	-		MMJJ_RS08280	0.73	-0.2
1,526,405	-		MMJJ_RS08280	0.73	+0.6
1,526,405	-		MMJJ_RS08280	0.73	+1.5
1,526,418	+		MMJJ_RS08280	0.74	-1.1
1,526,496	+		MMJJ_RS08280	0.79	+0.2
1,526,503	-		MMJJ_RS08280	0.79	+0.2
1,526,504	+		MMJJ_RS08280	0.79	+0.1
1,526,504	+		MMJJ_RS08280	0.79	-0.7
1,526,508	-		MMJJ_RS08280	0.79	-0.5
1,526,509	+		MMJJ_RS08280	0.79	-0.6
1,526,578	-		MMJJ_RS08280	0.83	+0.7
1,526,578	-		MMJJ_RS08280	0.83	-0.4
1,526,613	+		MMJJ_RS08280	0.85	-0.6
1,526,647	-		MMJJ_RS08280	0.87	+0.8
1,526,668	-		MMJJ_RS08280	0.88	+0.2
1,526,669	+		MMJJ_RS08280	0.88	+0.8
1,526,681	+		MMJJ_RS08280	0.89	+0.2
1,526,699	+				+0.0
1,526,699	+				+0.6
1,526,722	-				+0.4
1,526,751	+				-0.5
1,526,751	+				-0.3
1,526,755	-				+0.6
1,526,755	-				-0.0
1,526,755	-				+0.2
1,526,756	+				+0.1
1,526,756	+				+0.2
1,526,803	-				+0.5
1,526,804	+				-0.5
1,526,805	-				-0.4
1,526,805	-				+0.0
1,526,805	-				-0.1
1,526,806	+				-0.8
1,526,806	+				+0.9
1,526,806	+				-1.1
1,526,806	+				+1.6
1,526,810	+				+0.8
1,526,810	+				+0.2
1,526,810	+				+0.2
1,526,823	-				-0.2
1,526,859	+				-0.2
1,526,859	+				+0.7
1,526,863	-				-0.0
1,526,863	-				-0.4
1,526,863	-				+0.5
1,526,864	+				+0.7
1,526,950	+		MMJJ_RS08285	0.12	-0.2
1,526,950	+		MMJJ_RS08285	0.12	-0.6
1,526,953	-		MMJJ_RS08285	0.12	-0.3
1,526,953	-		MMJJ_RS08285	0.12	+0.0
1,526,954	+		MMJJ_RS08285	0.12	-0.6
1,526,954	+		MMJJ_RS08285	0.12	-0.8
1,526,965	-		MMJJ_RS08285	0.14	-0.2
1,526,966	+		MMJJ_RS08285	0.14	+0.1
1,526,966	+		MMJJ_RS08285	0.14	-0.6
1,526,999	+		MMJJ_RS08285	0.19	-0.4
1,527,068	+		MMJJ_RS08285	0.30	-0.0
1,527,096	-		MMJJ_RS08285	0.34	+0.6
1,527,098	-		MMJJ_RS08285	0.34	+0.1
1,527,098	-		MMJJ_RS08285	0.34	-0.2
1,527,098	-		MMJJ_RS08285	0.34	-0.7
1,527,170	+		MMJJ_RS08285	0.45	+0.1
1,527,190	-		MMJJ_RS08285	0.48	+0.3
1,527,190	-		MMJJ_RS08285	0.48	-0.1
1,527,191	+		MMJJ_RS08285	0.49	-1.6
1,527,200	-		MMJJ_RS08285	0.50	-0.1
1,527,200	-		MMJJ_RS08285	0.50	-0.9
1,527,201	+		MMJJ_RS08285	0.50	+0.8
1,527,201	+		MMJJ_RS08285	0.50	-0.9
1,527,205	+		MMJJ_RS08285	0.51	-0.4
1,527,226	-		MMJJ_RS08285	0.54	-0.6
1,527,226	-		MMJJ_RS08285	0.54	-1.3
1,527,227	+		MMJJ_RS08285	0.54	+0.1
1,527,227	+		MMJJ_RS08285	0.54	-0.4
1,527,227	+		MMJJ_RS08285	0.54	-0.3
1,527,227	+		MMJJ_RS08285	0.54	-0.1
1,527,259	-		MMJJ_RS08285	0.59	+0.9
1,527,283	-		MMJJ_RS08285	0.63	+0.3
1,527,289	-		MMJJ_RS08285	0.63	+0.3
1,527,289	-		MMJJ_RS08285	0.63	-0.1
1,527,290	+		MMJJ_RS08285	0.64	-0.2
1,527,300	-		MMJJ_RS08285	0.65	+0.5
1,527,300	-		MMJJ_RS08285	0.65	-0.3
1,527,301	+		MMJJ_RS08285	0.65	-0.5
1,527,301	+		MMJJ_RS08285	0.65	+0.3
1,527,389	+		MMJJ_RS08285	0.79	+0.7
1,527,390	-		MMJJ_RS08285	0.79	-0.8
1,527,391	+		MMJJ_RS08285	0.79	-0.6
1,527,446	-		MMJJ_RS08285	0.87	-0.5
1,527,446	-		MMJJ_RS08285	0.87	-0.1
1,527,528	-				+0.5
1,527,529	+				-1.6
1,527,529	-				+0.2
1,527,549	-				+0.4
1,527,570	+				-0.6
1,527,619	-				-0.2
1,527,619	-				+0.1
1,527,620	+				-0.2
1,527,620	+				-0.3
1,527,621	-				-1.8
1,527,621	-				+1.1
1,527,621	-				+0.9
1,527,622	+				+0.5
1,527,622	+				+0.3
1,527,622	+				+0.1
1,527,622	+				+0.4
1,527,622	+				+0.1
1,527,622	+				-0.3
1,527,622	+				-0.1
1,527,623	-				+0.4
1,527,624	+				-0.1
1,527,626	-				-2.0
1,527,627	+				+1.0
1,527,703	-				-0.2
1,527,775	+				-0.7
1,527,812	-				-0.1
1,527,827	-				+0.4
1,527,828	+				+0.3
1,527,831	-				-0.7
1,527,831	-				-0.4
1,527,832	+				-0.0
1,527,832	+				-0.4
1,527,832	+				+0.4
1,527,832	+				-1.0
1,527,832	+				-1.2
1,527,832	+				-0.2
1,527,832	+				-0.3
1,527,832	+				+1.2