Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02085

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02080 and MMJJ_RS02085 are separated by 41 nucleotidesMMJJ_RS02085 and MMJJ_RS02090 are separated by 19 nucleotidesMMJJ_RS02090 and MMJJ_RS02095 are separated by 64 nucleotides MMJJ_RS02080: MMJJ_RS02080 - AMP-binding protein, at 395,534 to 397,183 _RS02080 MMJJ_RS02085: MMJJ_RS02085 - hypothetical protein, at 397,225 to 398,148 _RS02085 MMJJ_RS02090: MMJJ_RS02090 - tyramine--L-glutamate ligase, at 398,168 to 399,076 _RS02090 MMJJ_RS02095: MMJJ_RS02095 - DUF2124 family protein, at 399,141 to 399,623 _RS02095 Position (kb) 397 398 399Strain fitness (log2 ratio) -3 -2 -1 0 1at 396.291 kb on - strand, within MMJJ_RS02080at 396.292 kb on + strand, within MMJJ_RS02080at 396.313 kb on + strand, within MMJJ_RS02080at 396.324 kb on - strand, within MMJJ_RS02080at 396.343 kb on + strand, within MMJJ_RS02080at 396.380 kb on - strand, within MMJJ_RS02080at 396.391 kb on - strand, within MMJJ_RS02080at 396.392 kb on + strand, within MMJJ_RS02080at 396.401 kb on + strand, within MMJJ_RS02080at 396.452 kb on + strand, within MMJJ_RS02080at 396.464 kb on + strand, within MMJJ_RS02080at 396.518 kb on - strand, within MMJJ_RS02080at 396.518 kb on - strand, within MMJJ_RS02080at 396.518 kb on - strand, within MMJJ_RS02080at 396.518 kb on - strand, within MMJJ_RS02080at 396.518 kb on - strand, within MMJJ_RS02080at 396.518 kb on - strand, within MMJJ_RS02080at 396.518 kb on - strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strandat 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.519 kb on + strand, within MMJJ_RS02080at 396.542 kb on - strand, within MMJJ_RS02080at 396.542 kb on - strand, within MMJJ_RS02080at 396.550 kb on - strand, within MMJJ_RS02080at 396.572 kb on + strand, within MMJJ_RS02080at 396.645 kb on - strand, within MMJJ_RS02080at 396.654 kb on - strand, within MMJJ_RS02080at 396.878 kb on + strand, within MMJJ_RS02080at 396.878 kb on + strand, within MMJJ_RS02080at 396.880 kb on + strand, within MMJJ_RS02080at 396.882 kb on + strand, within MMJJ_RS02080at 396.882 kb on + strand, within MMJJ_RS02080at 396.906 kb on - strand, within MMJJ_RS02080at 396.907 kb on + strand, within MMJJ_RS02080at 397.120 kb on + strandat 397.180 kb on + strandat 397.181 kb on - strandat 397.181 kb on - strandat 397.182 kb on + strandat 397.182 kb on + strandat 397.182 kb on + strandat 397.186 kb on - strandat 397.213 kb on + strandat 397.213 kb on + strandat 397.224 kb on - strandat 397.224 kb on - strandat 397.225 kb on + strandat 397.232 kb on + strandat 397.277 kb on - strandat 397.278 kb on + strandat 397.278 kb on + strandat 397.289 kb on - strandat 397.289 kb on - strandat 397.312 kb on + strandat 397.386 kb on + strand, within MMJJ_RS02085at 397.387 kb on - strand, within MMJJ_RS02085at 397.387 kb on - strand, within MMJJ_RS02085at 397.388 kb on + strand, within MMJJ_RS02085at 397.388 kb on + strand, within MMJJ_RS02085at 397.388 kb on + strand, within MMJJ_RS02085at 397.388 kb on + strand, within MMJJ_RS02085at 397.389 kb on - strand, within MMJJ_RS02085at 397.389 kb on - strand, within MMJJ_RS02085at 397.390 kb on + strand, within MMJJ_RS02085at 397.390 kb on + strand, within MMJJ_RS02085at 397.390 kb on + strand, within MMJJ_RS02085at 397.418 kb on - strand, within MMJJ_RS02085at 397.418 kb on - strand, within MMJJ_RS02085at 397.422 kb on + strand, within MMJJ_RS02085at 397.451 kb on - strand, within MMJJ_RS02085at 397.507 kb on - strand, within MMJJ_RS02085at 397.507 kb on - strand, within MMJJ_RS02085at 397.508 kb on + strand, within MMJJ_RS02085at 397.516 kb on + strand, within MMJJ_RS02085at 397.560 kb on + strand, within MMJJ_RS02085at 397.578 kb on - strand, within MMJJ_RS02085at 397.609 kb on + strand, within MMJJ_RS02085at 397.610 kb on - strand, within MMJJ_RS02085at 397.610 kb on - strand, within MMJJ_RS02085at 397.611 kb on + strand, within MMJJ_RS02085at 397.611 kb on + strand, within MMJJ_RS02085at 397.611 kb on + strand, within MMJJ_RS02085at 397.622 kb on + strand, within MMJJ_RS02085at 397.646 kb on - strand, within MMJJ_RS02085at 397.647 kb on + strand, within MMJJ_RS02085at 397.697 kb on - strand, within MMJJ_RS02085at 397.698 kb on + strand, within MMJJ_RS02085at 397.707 kb on - strand, within MMJJ_RS02085at 397.781 kb on - strand, within MMJJ_RS02085at 397.833 kb on + strand, within MMJJ_RS02085at 397.864 kb on - strand, within MMJJ_RS02085at 397.864 kb on - strand, within MMJJ_RS02085at 397.864 kb on - strand, within MMJJ_RS02085at 397.864 kb on - strand, within MMJJ_RS02085at 397.865 kb on + strand, within MMJJ_RS02085at 397.892 kb on - strand, within MMJJ_RS02085at 397.892 kb on - strand, within MMJJ_RS02085at 397.896 kb on + strand, within MMJJ_RS02085at 397.907 kb on - strand, within MMJJ_RS02085at 397.907 kb on - strand, within MMJJ_RS02085at 397.943 kb on - strand, within MMJJ_RS02085at 397.943 kb on - strand, within MMJJ_RS02085at 397.947 kb on + strand, within MMJJ_RS02085at 397.971 kb on - strand, within MMJJ_RS02085at 397.971 kb on - strand, within MMJJ_RS02085at 397.971 kb on - strand, within MMJJ_RS02085at 397.971 kb on - strand, within MMJJ_RS02085at 397.999 kb on + strand, within MMJJ_RS02085at 398.007 kb on + strand, within MMJJ_RS02085at 398.034 kb on - strand, within MMJJ_RS02085at 398.034 kb on - strand, within MMJJ_RS02085at 398.048 kb on - strand, within MMJJ_RS02085at 398.110 kb on + strandat 398.184 kb on - strandat 398.261 kb on + strand, within MMJJ_RS02090at 398.268 kb on - strand, within MMJJ_RS02090at 398.374 kb on + strand, within MMJJ_RS02090at 398.458 kb on + strand, within MMJJ_RS02090at 398.463 kb on + strand, within MMJJ_RS02090at 398.479 kb on + strand, within MMJJ_RS02090at 398.527 kb on + strand, within MMJJ_RS02090at 398.556 kb on + strand, within MMJJ_RS02090at 398.667 kb on + strand, within MMJJ_RS02090at 398.752 kb on - strand, within MMJJ_RS02090at 398.753 kb on + strandat 398.795 kb on + strand, within MMJJ_RS02090at 398.804 kb on + strand, within MMJJ_RS02090at 398.845 kb on - strand, within MMJJ_RS02090at 398.916 kb on - strand, within MMJJ_RS02090at 399.100 kb on + strandat 399.109 kb on + strandat 399.113 kb on - strandat 399.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE
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396,291 - MMJJ_RS02080 0.46 -0.1
396,292 + MMJJ_RS02080 0.46 -0.2
396,313 + MMJJ_RS02080 0.47 +0.2
396,324 - MMJJ_RS02080 0.48 +0.6
396,343 + MMJJ_RS02080 0.49 +0.4
396,380 - MMJJ_RS02080 0.51 +0.0
396,391 - MMJJ_RS02080 0.52 +0.6
396,392 + MMJJ_RS02080 0.52 +0.0
396,401 + MMJJ_RS02080 0.53 +0.4
396,452 + MMJJ_RS02080 0.56 -0.1
396,464 + MMJJ_RS02080 0.56 +0.4
396,518 - MMJJ_RS02080 0.60 +0.6
396,518 - MMJJ_RS02080 0.60 -0.4
396,518 - MMJJ_RS02080 0.60 +0.3
396,518 - MMJJ_RS02080 0.60 -0.1
396,518 - MMJJ_RS02080 0.60 -0.5
396,518 - MMJJ_RS02080 0.60 -0.8
396,518 - MMJJ_RS02080 0.60 +0.7
396,519 + MMJJ_RS02080 0.60 +0.2
396,519 + MMJJ_RS02080 0.60 -0.0
396,519 + MMJJ_RS02080 0.60 -0.6
396,519 + MMJJ_RS02080 0.60 -0.8
396,519 + MMJJ_RS02080 0.60 +0.1
396,519 + -0.8
396,519 + MMJJ_RS02080 0.60 +0.5
396,519 + MMJJ_RS02080 0.60 +0.8
396,519 + MMJJ_RS02080 0.60 +0.7
396,519 + MMJJ_RS02080 0.60 +0.5
396,519 + MMJJ_RS02080 0.60 +0.8
396,519 + MMJJ_RS02080 0.60 +0.5
396,519 + MMJJ_RS02080 0.60 +0.7
396,542 - MMJJ_RS02080 0.61 +0.0
396,542 - MMJJ_RS02080 0.61 -0.6
396,550 - MMJJ_RS02080 0.62 +0.6
396,572 + MMJJ_RS02080 0.63 +0.3
396,645 - MMJJ_RS02080 0.67 -0.2
396,654 - MMJJ_RS02080 0.68 -0.4
396,878 + MMJJ_RS02080 0.81 +0.5
396,878 + MMJJ_RS02080 0.81 -0.4
396,880 + MMJJ_RS02080 0.82 -0.2
396,882 + MMJJ_RS02080 0.82 +0.8
396,882 + MMJJ_RS02080 0.82 -0.8
396,906 - MMJJ_RS02080 0.83 +0.1
396,907 + MMJJ_RS02080 0.83 +0.2
397,120 + -1.8
397,180 + -0.1
397,181 - -0.4
397,181 - +0.1
397,182 + -0.4
397,182 + +0.1
397,182 + -0.6
397,186 - +0.3
397,213 + -0.4
397,213 + +0.7
397,224 - -0.7
397,224 - -0.3
397,225 + -0.2
397,232 + +0.2
397,277 - -0.2
397,278 + +0.3
397,278 + +0.8
397,289 - -0.4
397,289 - +0.3
397,312 + +0.8
397,386 + MMJJ_RS02085 0.17 -0.1
397,387 - MMJJ_RS02085 0.18 +0.1
397,387 - MMJJ_RS02085 0.18 +0.1
397,388 + MMJJ_RS02085 0.18 +0.0
397,388 + MMJJ_RS02085 0.18 -0.2
397,388 + MMJJ_RS02085 0.18 -0.1
397,388 + MMJJ_RS02085 0.18 -2.6
397,389 - MMJJ_RS02085 0.18 +0.4
397,389 - MMJJ_RS02085 0.18 +0.3
397,390 + MMJJ_RS02085 0.18 +0.5
397,390 + MMJJ_RS02085 0.18 +0.4
397,390 + MMJJ_RS02085 0.18 +1.3
397,418 - MMJJ_RS02085 0.21 +0.7
397,418 - MMJJ_RS02085 0.21 +0.4
397,422 + MMJJ_RS02085 0.21 -0.1
397,451 - MMJJ_RS02085 0.24 -2.4
397,507 - MMJJ_RS02085 0.31 -0.1
397,507 - MMJJ_RS02085 0.31 +0.5
397,508 + MMJJ_RS02085 0.31 +0.0
397,516 + MMJJ_RS02085 0.31 +1.4
397,560 + MMJJ_RS02085 0.36 +0.1
397,578 - MMJJ_RS02085 0.38 -0.1
397,609 + MMJJ_RS02085 0.42 +0.7
397,610 - MMJJ_RS02085 0.42 -0.1
397,610 - MMJJ_RS02085 0.42 -0.4
397,611 + MMJJ_RS02085 0.42 +0.5
397,611 + MMJJ_RS02085 0.42 +0.1
397,611 + MMJJ_RS02085 0.42 +0.9
397,622 + MMJJ_RS02085 0.43 +0.1
397,646 - MMJJ_RS02085 0.46 -0.2
397,647 + MMJJ_RS02085 0.46 +0.6
397,697 - MMJJ_RS02085 0.51 +0.5
397,698 + MMJJ_RS02085 0.51 -0.7
397,707 - MMJJ_RS02085 0.52 +1.0
397,781 - MMJJ_RS02085 0.60 -0.5
397,833 + MMJJ_RS02085 0.66 -0.2
397,864 - MMJJ_RS02085 0.69 -0.3
397,864 - MMJJ_RS02085 0.69 -1.9
397,864 - MMJJ_RS02085 0.69 -0.3
397,864 - MMJJ_RS02085 0.69 +1.4
397,865 + MMJJ_RS02085 0.69 +0.3
397,892 - MMJJ_RS02085 0.72 -0.0
397,892 - MMJJ_RS02085 0.72 -1.4
397,896 + MMJJ_RS02085 0.73 +0.3
397,907 - MMJJ_RS02085 0.74 -0.0
397,907 - MMJJ_RS02085 0.74 +0.0
397,943 - MMJJ_RS02085 0.78 -0.1
397,943 - MMJJ_RS02085 0.78 +0.6
397,947 + MMJJ_RS02085 0.78 +0.5
397,971 - MMJJ_RS02085 0.81 -0.0
397,971 - MMJJ_RS02085 0.81 +0.6
397,971 - MMJJ_RS02085 0.81 +0.1
397,971 - MMJJ_RS02085 0.81 -0.1
397,999 + MMJJ_RS02085 0.84 +0.6
398,007 + MMJJ_RS02085 0.85 -1.4
398,034 - MMJJ_RS02085 0.88 -1.2
398,034 - MMJJ_RS02085 0.88 +0.5
398,048 - MMJJ_RS02085 0.89 +0.4
398,110 + +0.6
398,184 - -2.0
398,261 + MMJJ_RS02090 0.10 -1.1
398,268 - MMJJ_RS02090 0.11 -2.6
398,374 + MMJJ_RS02090 0.23 -0.6
398,458 + MMJJ_RS02090 0.32 -2.0
398,463 + MMJJ_RS02090 0.32 -0.2
398,479 + MMJJ_RS02090 0.34 -2.1
398,527 + MMJJ_RS02090 0.39 -1.8
398,556 + MMJJ_RS02090 0.43 -2.6
398,667 + MMJJ_RS02090 0.55 -0.5
398,752 - MMJJ_RS02090 0.64 -2.5
398,753 + -0.8
398,795 + MMJJ_RS02090 0.69 -1.2
398,804 + MMJJ_RS02090 0.70 -2.4
398,845 - MMJJ_RS02090 0.74 -3.0
398,916 - MMJJ_RS02090 0.82 -2.6
399,100 + +1.3
399,109 + +0.5
399,113 - +0.0
399,113 - +0.5

Or see this region's nucleotide sequence