Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24040 and BPHYT_RS24045 are separated by 21 nucleotides BPHYT_RS24045 and BPHYT_RS24050 are separated by 88 nucleotides BPHYT_RS24050 and BPHYT_RS24055 are separated by 306 nucleotides
BPHYT_RS24040: BPHYT_RS24040 - amino acid ABC transporter, at 958,084 to 958,746
_RS24040
BPHYT_RS24045: BPHYT_RS24045 - amino acid ABC transporter, at 958,768 to 959,418
_RS24045
BPHYT_RS24050: BPHYT_RS24050 - amino acid ABC transporter, at 959,507 to 960,334
_RS24050
BPHYT_RS24055: BPHYT_RS24055 - oxidoreductase, at 960,641 to 961,630
_RS24055
Position (kb) 959
960
961 Strain fitness (log2 ratio) -1
0
1 at 958.521 kb on - strand, within BPHYT_RS24040 at 958.571 kb on + strand, within BPHYT_RS24040 at 958.835 kb on + strand, within BPHYT_RS24045 at 959.195 kb on + strand, within BPHYT_RS24045 at 959.195 kb on + strand, within BPHYT_RS24045 at 959.434 kb on + strand at 959.511 kb on + strand at 959.673 kb on + strand, within BPHYT_RS24050 at 959.994 kb on + strand, within BPHYT_RS24050 at 959.995 kb on - strand, within BPHYT_RS24050 at 960.426 kb on - strand at 960.426 kb on - strand at 960.908 kb on + strand, within BPHYT_RS24055 at 961.093 kb on - strand, within BPHYT_RS24055 at 961.312 kb on + strand, within BPHYT_RS24055
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 958,521 - BPHYT_RS24040 0.66 -0.2 958,571 + BPHYT_RS24040 0.73 +1.5 958,835 + BPHYT_RS24045 0.10 -0.6 959,195 + BPHYT_RS24045 0.66 +0.8 959,195 + BPHYT_RS24045 0.66 +0.6 959,434 + -1.1 959,511 + -0.1 959,673 + BPHYT_RS24050 0.20 -0.1 959,994 + BPHYT_RS24050 0.59 -0.1 959,995 - BPHYT_RS24050 0.59 -1.1 960,426 - -0.8 960,426 - -0.2 960,908 + BPHYT_RS24055 0.27 +0.5 961,093 - BPHYT_RS24055 0.46 -0.0 961,312 + BPHYT_RS24055 0.68 -0.1
Or see this region's nucleotide sequence