Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16710 and BPHYT_RS16715 are separated by 442 nucleotides BPHYT_RS16715 and BPHYT_RS16720 are separated by 89 nucleotides BPHYT_RS16720 and BPHYT_RS16725 are separated by 10 nucleotides
BPHYT_RS16710: BPHYT_RS16710 - LysR family transcriptional regulator, at 3,782,671 to 3,783,627
_RS16710
BPHYT_RS16715: BPHYT_RS16715 - adenylosuccinate lyase, at 3,784,070 to 3,785,458
_RS16715
BPHYT_RS16720: BPHYT_RS16720 - Gluconokinase (EC 2.7.1.12) (from data) , at 3,785,548 to 3,786,045
_RS16720
BPHYT_RS16725: BPHYT_RS16725 - gluconate:H+ symporter (gntT) (from data) , at 3,786,056 to 3,787,453
_RS16725
Position (kb)
3784
3785
3786 Strain fitness (log2 ratio)
-2
-1
0
1 at 3783.880 kb on - strand at 3783.921 kb on + strand at 3783.939 kb on + strand at 3785.456 kb on + strand at 3785.653 kb on - strand, within BPHYT_RS16720 at 3785.745 kb on - strand, within BPHYT_RS16720 at 3785.745 kb on - strand, within BPHYT_RS16720 at 3786.058 kb on - strand at 3786.058 kb on - strand at 3786.162 kb on + strand at 3786.162 kb on + strand at 3786.163 kb on - strand at 3786.163 kb on - strand at 3786.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 3,783,880 - +1.0 3,783,921 + -0.2 3,783,939 + -1.8 3,785,456 + +0.2 3,785,653 - BPHYT_RS16720 0.21 +0.2 3,785,745 - BPHYT_RS16720 0.40 -0.0 3,785,745 - BPHYT_RS16720 0.40 -0.2 3,786,058 - +0.2 3,786,058 - +1.4 3,786,162 + -0.0 3,786,162 + +0.2 3,786,163 - +0.4 3,786,163 - +0.2 3,786,163 - +1.3
Or see this region's nucleotide sequence