Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17865

Experiment: CDM1 without Tyrosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Tyrosine
1,788,129	+		BBR_RS17860	0.49	-4.0
1,788,133	-		BBR_RS17860	0.50	-1.8
1,788,133	-		BBR_RS17860	0.50	-2.5
1,788,153	-		BBR_RS17860	0.51	-2.2
1,788,158	+		BBR_RS17860	0.51	-1.9
1,788,195	+		BBR_RS17860	0.53	+0.6
1,788,197	+		BBR_RS17860	0.53	-3.2
1,788,203	-		BBR_RS17860	0.53	-3.7
1,788,205	-		BBR_RS17860	0.53	-0.4
1,788,217	-		BBR_RS17860	0.54	-1.6
1,788,224	+		BBR_RS17860	0.54	-1.4
1,788,237	-		BBR_RS17860	0.55	-1.8
1,788,237	-		BBR_RS17860	0.55	-0.5
1,788,311	+		BBR_RS17860	0.59	-1.6
1,788,320	+		BBR_RS17860	0.59	-0.6
1,788,324	-		BBR_RS17860	0.59	-1.4
1,788,325	+		BBR_RS17860	0.59	-1.6
1,788,389	-		BBR_RS17860	0.63	-0.5
1,788,400	+		BBR_RS17860	0.63	-0.5
1,788,406	-		BBR_RS17860	0.64	-1.1
1,788,408	+		BBR_RS17860	0.64	-1.2
1,788,430	+		BBR_RS17860	0.65	-0.5
1,788,441	+		BBR_RS17860	0.65	-1.4
1,788,470	+		BBR_RS17860	0.67	-1.7
1,788,483	+		BBR_RS17860	0.68	-3.1
1,788,483	+		BBR_RS17860	0.68	-1.3
1,788,483	-		BBR_RS17860	0.68	-2.1
1,788,483	-		BBR_RS17860	0.68	-2.6
1,788,491	-		BBR_RS17860	0.68	-1.7
1,788,491	-		BBR_RS17860	0.68	-0.9
1,788,509	+		BBR_RS17860	0.69	+0.2
1,788,517	-		BBR_RS17860	0.69	-0.1
1,788,517	-		BBR_RS17860	0.69	-2.7
1,788,528	+		BBR_RS17860	0.70	-1.7
1,788,528	+		BBR_RS17860	0.70	-2.2
1,788,536	-		BBR_RS17860	0.70	-1.7
1,788,604	-		BBR_RS17860	0.74	-2.9
1,788,619	+		BBR_RS17860	0.74	-0.5
1,788,619	+		BBR_RS17860	0.74	-3.0
1,788,627	-		BBR_RS17860	0.75	-2.0
1,788,657	-		BBR_RS17860	0.76	-2.3
1,788,662	-		BBR_RS17860	0.77	-2.4
1,788,662	-		BBR_RS17860	0.77	-1.6
1,788,675	-		BBR_RS17860	0.77	-0.6
1,788,676	+		BBR_RS17860	0.77	-3.3
1,788,703	-		BBR_RS17860	0.79	-1.2
1,788,725	+		BBR_RS17860	0.80	-4.2
1,788,725	+		BBR_RS17860	0.80	-1.7
1,788,725	+		BBR_RS17860	0.80	-1.0
1,788,733	-		BBR_RS17860	0.80	-2.6
1,788,733	-		BBR_RS17860	0.80	-1.2
1,788,750	+		BBR_RS17860	0.81	-1.3
1,788,757	+		BBR_RS17860	0.81	-4.7
1,788,757	+		BBR_RS17860	0.81	-2.5
1,788,758	+		BBR_RS17860	0.82	-0.5
1,788,758	+		BBR_RS17860	0.82	-1.3
1,788,759	-		BBR_RS17860	0.82	-2.0
1,788,782	+		BBR_RS17860	0.83	-2.3
1,788,816	+		BBR_RS17860	0.85	-1.4
1,788,819	-		BBR_RS17860	0.85	-1.3
1,788,826	-		BBR_RS17860	0.85	-0.1
1,788,924	-				+0.0
1,788,940	+				-0.3
1,789,035	+				-3.2
1,789,035	+				+0.8
1,789,043	-				-3.7
1,789,043	-				-0.7
1,789,045	+				-2.7
1,789,053	-				-0.8
1,789,063	-				+0.7
1,789,079	+				-4.0
1,789,101	+				-2.9
1,789,101	+				-3.1
1,789,101	+				-3.2
1,789,153	-				-3.0
1,789,178	-		BBR_RS17865	0.12	-1.3
1,789,181	-		BBR_RS17865	0.12	-0.7
1,789,215	-		BBR_RS17865	0.19	-3.0
1,789,230	-		BBR_RS17865	0.21	-3.4
1,789,270	-		BBR_RS17865	0.29	-3.0
1,789,380	-		BBR_RS17865	0.49	-1.8
1,789,454	-		BBR_RS17865	0.63	-1.0
1,789,454	-		BBR_RS17865	0.63	-1.4
1,789,535	-		BBR_RS17865	0.78	-2.3
1,789,559	+		BBR_RS17865	0.83	-1.6
1,789,559	+		BBR_RS17865	0.83	-1.9
1,789,572	-		BBR_RS17865	0.85	-1.7
1,789,603	+				-2.1
1,789,611	-				-1.2
1,789,611	-				+0.3
1,789,628	-				-0.6
1,789,648	+				+1.4
1,789,653	+				-0.1
1,789,663	+				+0.4
1,789,663	+				-0.9
1,789,692	+				-1.3
1,789,692	+				+0.4
1,789,790	+				-0.2
1,789,797	+				+0.2
1,789,857	+				-0.8
1,789,857	+				+0.3
1,789,857	+				+0.1
1,789,857	+				+0.3
1,789,857	+				-0.5
1,789,863	-				+0.2
1,789,883	+				+0.1
1,789,883	+				-0.1
1,789,888	+				+0.1
1,789,896	-				+0.6
1,789,896	-				+1.1
1,789,896	-				+0.4
1,789,896	-				+1.5
1,789,896	-				-0.0
1,789,896	-				-0.9
1,789,896	-				+0.4
1,789,896	-				-0.3
1,789,923	+				+0.9
1,789,954	+				+0.1
1,790,020	-		BBR_RS17870	0.13	+0.8
1,790,059	+		BBR_RS17870	0.17	-3.7
1,790,071	+		BBR_RS17870	0.18	+0.0
1,790,089	-		BBR_RS17870	0.19	+0.7
1,790,165	+		BBR_RS17870	0.25	+0.4
1,790,179	+		BBR_RS17870	0.27	-1.8
1,790,208	-		BBR_RS17870	0.29	-0.5
1,790,237	+		BBR_RS17870	0.31	-1.2
1,790,245	-		BBR_RS17870	0.32	-0.4
1,790,257	+		BBR_RS17870	0.33	-0.8
1,790,257	+		BBR_RS17870	0.33	-0.2
1,790,257	+		BBR_RS17870	0.33	-0.1
1,790,257	+		BBR_RS17870	0.33	-0.6
1,790,257	+		BBR_RS17870	0.33	-0.0
1,790,257	+		BBR_RS17870	0.33	+0.7
1,790,257	+		BBR_RS17870	0.33	+0.8
1,790,257	+		BBR_RS17870	0.33	+0.2
1,790,257	+		BBR_RS17870	0.33	-1.1
1,790,257	+		BBR_RS17870	0.33	+0.7
1,790,257	+		BBR_RS17870	0.33	-0.2
1,790,257	+		BBR_RS17870	0.33	+0.7
1,790,257	+		BBR_RS17870	0.33	+0.7
1,790,265	-		BBR_RS17870	0.34	-0.6
1,790,265	-		BBR_RS17870	0.34	+0.6
1,790,265	-		BBR_RS17870	0.34	+0.2
1,790,265	-		BBR_RS17870	0.34	+0.8
1,790,265	-		BBR_RS17870	0.34	+0.2
1,790,265	-		BBR_RS17870	0.34	-1.3
1,790,265	-		BBR_RS17870	0.34	+0.7
1,790,265	-		BBR_RS17870	0.34	-0.5
1,790,265	-		BBR_RS17870	0.34	+0.6
1,790,265	-		BBR_RS17870	0.34	-0.8
1,790,267	-		BBR_RS17870	0.34	+0.8
1,790,272	+		BBR_RS17870	0.34	+0.7
1,790,272	+		BBR_RS17870	0.34	-0.2
1,790,275	-		BBR_RS17870	0.35	+0.5
1,790,285	+		BBR_RS17870	0.35	+0.4
1,790,285	-		BBR_RS17870	0.35	-0.6
1,790,285	-		BBR_RS17870	0.35	+0.4
1,790,289	+		BBR_RS17870	0.36	-0.1
1,790,293	-		BBR_RS17870	0.36	-1.1
1,790,322	+		BBR_RS17870	0.39	+0.9
1,790,331	-		BBR_RS17870	0.39	+0.3
1,790,334	+		BBR_RS17870	0.40	-0.4
1,790,337	-		BBR_RS17870	0.40	+0.2
1,790,344	+		BBR_RS17870	0.40	-0.5
1,790,344	+		BBR_RS17870	0.40	-0.4
1,790,344	+		BBR_RS17870	0.40	-0.3
1,790,344	+		BBR_RS17870	0.40	-0.8
1,790,344	+		BBR_RS17870	0.40	-0.6
1,790,344	+		BBR_RS17870	0.40	+2.4
1,790,344	+		BBR_RS17870	0.40	-1.4
1,790,344	+		BBR_RS17870	0.40	-0.7
1,790,344	+		BBR_RS17870	0.40	+0.3
1,790,352	-		BBR_RS17870	0.41	+0.3
1,790,358	+		BBR_RS17870	0.41	-0.3
1,790,407	+		BBR_RS17870	0.46	+0.4
1,790,408	-		BBR_RS17870	0.46	+0.3
1,790,413	-		BBR_RS17870	0.46	+0.3
1,790,425	+		BBR_RS17870	0.47	-0.5
1,790,435	+		BBR_RS17870	0.48	+0.4
1,790,450	+		BBR_RS17870	0.49	+0.7
1,790,461	+		BBR_RS17870	0.50	+0.7
1,790,466	+		BBR_RS17870	0.51	+1.3
1,790,471	+		BBR_RS17870	0.51	-0.3
1,790,471	+		BBR_RS17870	0.51	+0.6
1,790,479	-		BBR_RS17870	0.52	+0.8
1,790,479	-		BBR_RS17870	0.52	+1.4
1,790,486	-		BBR_RS17870	0.52	-0.5
1,790,498	-		BBR_RS17870	0.53	-0.3
1,790,509	-		BBR_RS17870	0.54	-1.4
1,790,509	-		BBR_RS17870	0.54	+0.6
1,790,510	-		BBR_RS17870	0.54	+0.9
1,790,575	-		BBR_RS17870	0.60	+0.4
1,790,594	-		BBR_RS17870	0.61	-0.5
1,790,638	+		BBR_RS17870	0.65	+0.5
1,790,638	+		BBR_RS17870	0.65	+0.5
1,790,646	-		BBR_RS17870	0.66	+0.7
1,790,646	-		BBR_RS17870	0.66	+0.3