Experiment: CDM1 without Tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12495 and BBR_RS12500 are separated by 235 nucleotides BBR_RS12500 and BBR_RS12505 are separated by 52 nucleotides
BBR_RS12495: BBR_RS12495 - sugar ABC transporter substrate-binding protein, at 555,379 to 556,728
_RS12495
BBR_RS12500: BBR_RS12500 - sugar ABC transporter permease, at 556,964 to 557,911
_RS12500
BBR_RS12505: BBR_RS12505 - ABC transporter permease, at 557,964 to 558,962
_RS12505
Position (kb) 556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 555.969 kb on + strand, within BBR_RS12495 at 555.977 kb on + strand, within BBR_RS12495 at 555.984 kb on + strand, within BBR_RS12495 at 555.994 kb on + strand, within BBR_RS12495 at 555.999 kb on + strand, within BBR_RS12495 at 556.002 kb on - strand, within BBR_RS12495 at 556.002 kb on - strand, within BBR_RS12495 at 556.003 kb on + strand, within BBR_RS12495 at 556.003 kb on + strand, within BBR_RS12495 at 556.021 kb on - strand, within BBR_RS12495 at 556.021 kb on - strand, within BBR_RS12495 at 556.021 kb on - strand, within BBR_RS12495 at 556.028 kb on - strand, within BBR_RS12495 at 556.044 kb on + strand, within BBR_RS12495 at 556.065 kb on + strand, within BBR_RS12495 at 556.065 kb on + strand, within BBR_RS12495 at 556.065 kb on + strand, within BBR_RS12495 at 556.067 kb on - strand, within BBR_RS12495 at 556.067 kb on - strand, within BBR_RS12495 at 556.067 kb on - strand, within BBR_RS12495 at 556.105 kb on + strand, within BBR_RS12495 at 556.105 kb on + strand, within BBR_RS12495 at 556.118 kb on + strand, within BBR_RS12495 at 556.128 kb on + strand, within BBR_RS12495 at 556.128 kb on + strand, within BBR_RS12495 at 556.128 kb on - strand, within BBR_RS12495 at 556.135 kb on + strand, within BBR_RS12495 at 556.136 kb on - strand, within BBR_RS12495 at 556.145 kb on + strand, within BBR_RS12495 at 556.145 kb on + strand, within BBR_RS12495 at 556.145 kb on + strand, within BBR_RS12495 at 556.153 kb on + strand, within BBR_RS12495 at 556.153 kb on + strand, within BBR_RS12495 at 556.153 kb on - strand, within BBR_RS12495 at 556.153 kb on - strand, within BBR_RS12495 at 556.160 kb on + strand, within BBR_RS12495 at 556.189 kb on + strand, within BBR_RS12495 at 556.243 kb on - strand, within BBR_RS12495 at 556.243 kb on - strand, within BBR_RS12495 at 556.341 kb on + strand, within BBR_RS12495 at 556.355 kb on - strand, within BBR_RS12495 at 556.360 kb on + strand, within BBR_RS12495 at 556.377 kb on + strand, within BBR_RS12495 at 556.377 kb on + strand, within BBR_RS12495 at 556.377 kb on + strand, within BBR_RS12495 at 556.377 kb on + strand, within BBR_RS12495 at 556.377 kb on + strand, within BBR_RS12495 at 556.385 kb on - strand, within BBR_RS12495 at 556.389 kb on + strand, within BBR_RS12495 at 556.389 kb on + strand, within BBR_RS12495 at 556.397 kb on - strand, within BBR_RS12495 at 556.399 kb on + strand, within BBR_RS12495 at 556.399 kb on + strand, within BBR_RS12495 at 556.412 kb on - strand, within BBR_RS12495 at 556.416 kb on + strand, within BBR_RS12495 at 556.426 kb on - strand, within BBR_RS12495 at 556.454 kb on - strand, within BBR_RS12495 at 556.503 kb on - strand, within BBR_RS12495 at 556.558 kb on + strand, within BBR_RS12495 at 556.586 kb on - strand, within BBR_RS12495 at 556.594 kb on + strand at 556.595 kb on - strand at 556.610 kb on + strand at 556.610 kb on + strand at 556.620 kb on + strand at 556.626 kb on + strand at 556.626 kb on + strand at 556.626 kb on - strand at 556.634 kb on - strand at 556.634 kb on - strand at 556.634 kb on - strand at 556.636 kb on + strand at 556.644 kb on - strand at 556.654 kb on - strand at 556.658 kb on - strand at 556.660 kb on + strand at 556.660 kb on + strand at 556.660 kb on + strand at 556.660 kb on + strand at 556.660 kb on + strand at 556.660 kb on + strand at 556.660 kb on + strand at 556.660 kb on + strand at 556.668 kb on - strand at 556.668 kb on - strand at 556.668 kb on - strand at 556.668 kb on - strand at 556.668 kb on - strand at 556.706 kb on + strand at 556.706 kb on - strand at 556.712 kb on - strand at 556.712 kb on - strand at 556.712 kb on - strand at 556.714 kb on - strand at 556.757 kb on - strand at 556.758 kb on + strand at 556.758 kb on + strand at 556.761 kb on - strand at 556.766 kb on - strand at 556.771 kb on + strand at 556.805 kb on - strand at 556.805 kb on - strand at 556.818 kb on + strand at 556.824 kb on - strand at 556.826 kb on - strand at 556.842 kb on - strand at 556.850 kb on - strand at 556.855 kb on + strand at 556.860 kb on + strand at 556.863 kb on - strand at 556.863 kb on - strand at 556.863 kb on - strand at 556.865 kb on + strand at 556.873 kb on - strand at 556.878 kb on - strand at 556.897 kb on + strand at 556.903 kb on - strand at 556.905 kb on - strand at 556.909 kb on - strand at 556.922 kb on - strand at 556.997 kb on - strand at 557.012 kb on + strand at 557.012 kb on + strand at 557.012 kb on + strand at 557.024 kb on + strand at 557.024 kb on + strand at 557.024 kb on + strand at 557.024 kb on + strand at 557.024 kb on + strand at 557.024 kb on + strand at 557.024 kb on + strand at 557.024 kb on + strand at 557.024 kb on + strand at 557.024 kb on + strand at 557.025 kb on - strand at 557.032 kb on - strand at 557.052 kb on - strand at 557.052 kb on - strand at 557.081 kb on - strand, within BBR_RS12500 at 558.799 kb on + strand, within BBR_RS12505 at 558.823 kb on + strand, within BBR_RS12505
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Tyrosine remove 555,969 + BBR_RS12495 0.44 -0.1 555,977 + BBR_RS12495 0.44 +1.0 555,984 + BBR_RS12495 0.45 +0.2 555,994 + BBR_RS12495 0.46 -0.1 555,999 + BBR_RS12495 0.46 +0.2 556,002 - BBR_RS12495 0.46 -0.4 556,002 - BBR_RS12495 0.46 +0.1 556,003 + BBR_RS12495 0.46 +0.8 556,003 + BBR_RS12495 0.46 +0.8 556,021 - BBR_RS12495 0.48 -0.0 556,021 - BBR_RS12495 0.48 -2.0 556,021 - BBR_RS12495 0.48 +0.0 556,028 - BBR_RS12495 0.48 -0.4 556,044 + BBR_RS12495 0.49 -0.7 556,065 + BBR_RS12495 0.51 -0.2 556,065 + BBR_RS12495 0.51 +0.2 556,065 + BBR_RS12495 0.51 -1.4 556,067 - BBR_RS12495 0.51 -0.3 556,067 - BBR_RS12495 0.51 +1.9 556,067 - BBR_RS12495 0.51 -0.8 556,105 + BBR_RS12495 0.54 -0.0 556,105 + BBR_RS12495 0.54 -0.2 556,118 + BBR_RS12495 0.55 -0.1 556,128 + BBR_RS12495 0.55 -1.5 556,128 + BBR_RS12495 0.55 -0.7 556,128 - BBR_RS12495 0.55 +0.3 556,135 + BBR_RS12495 0.56 -2.4 556,136 - BBR_RS12495 0.56 -0.1 556,145 + BBR_RS12495 0.57 -0.2 556,145 + BBR_RS12495 0.57 +0.3 556,145 + BBR_RS12495 0.57 +0.6 556,153 + BBR_RS12495 0.57 +0.8 556,153 + BBR_RS12495 0.57 -0.2 556,153 - BBR_RS12495 0.57 +0.1 556,153 - BBR_RS12495 0.57 -2.2 556,160 + BBR_RS12495 0.58 +0.0 556,189 + BBR_RS12495 0.60 -0.1 556,243 - BBR_RS12495 0.64 +0.6 556,243 - BBR_RS12495 0.64 -0.0 556,341 + BBR_RS12495 0.71 +0.6 556,355 - BBR_RS12495 0.72 +0.0 556,360 + BBR_RS12495 0.73 +0.7 556,377 + BBR_RS12495 0.74 +0.6 556,377 + BBR_RS12495 0.74 +0.3 556,377 + BBR_RS12495 0.74 +2.9 556,377 + BBR_RS12495 0.74 +0.4 556,377 + BBR_RS12495 0.74 +0.5 556,385 - BBR_RS12495 0.75 -2.5 556,389 + BBR_RS12495 0.75 +0.9 556,389 + BBR_RS12495 0.75 +2.3 556,397 - BBR_RS12495 0.75 -0.5 556,399 + BBR_RS12495 0.76 -0.7 556,399 + BBR_RS12495 0.76 -1.5 556,412 - BBR_RS12495 0.77 +0.6 556,416 + BBR_RS12495 0.77 -0.4 556,426 - BBR_RS12495 0.78 +1.3 556,454 - BBR_RS12495 0.80 -0.2 556,503 - BBR_RS12495 0.83 +1.0 556,558 + BBR_RS12495 0.87 +1.0 556,586 - BBR_RS12495 0.89 -1.1 556,594 + +2.2 556,595 - -1.9 556,610 + -1.6 556,610 + +1.1 556,620 + +0.1 556,626 + -0.1 556,626 + +0.3 556,626 - +1.2 556,634 - +0.5 556,634 - +1.1 556,634 - +0.3 556,636 + +0.3 556,644 - -0.5 556,654 - +0.5 556,658 - +0.7 556,660 + -0.1 556,660 + +1.1 556,660 + -0.0 556,660 + +0.4 556,660 + -0.1 556,660 + -0.7 556,660 + -0.8 556,660 + -0.3 556,668 - +0.5 556,668 - +0.2 556,668 - -0.5 556,668 - +0.6 556,668 - +0.6 556,706 + -1.7 556,706 - +1.0 556,712 - +0.4 556,712 - +0.3 556,712 - -2.8 556,714 - +0.9 556,757 - +0.2 556,758 + -0.1 556,758 + +1.3 556,761 - +0.5 556,766 - +0.6 556,771 + -0.3 556,805 - -0.4 556,805 - -0.2 556,818 + -0.0 556,824 - -0.4 556,826 - +0.6 556,842 - -0.4 556,850 - -0.8 556,855 + -0.6 556,860 + -0.5 556,863 - +0.5 556,863 - -0.2 556,863 - -0.4 556,865 + +0.7 556,873 - +0.4 556,878 - +1.2 556,897 + -0.7 556,903 - +0.9 556,905 - +1.0 556,909 - +0.4 556,922 - +0.4 556,997 - -1.0 557,012 + +0.7 557,012 + +0.1 557,012 + -1.0 557,024 + +1.5 557,024 + +0.5 557,024 + +0.2 557,024 + +0.4 557,024 + +0.5 557,024 + +1.1 557,024 + +0.1 557,024 + +0.8 557,024 + -0.5 557,024 + +1.0 557,025 - -0.3 557,032 - +0.6 557,052 - -0.6 557,052 - -0.8 557,081 - BBR_RS12500 0.12 -3.4 558,799 + BBR_RS12505 0.84 -0.4 558,823 + BBR_RS12505 0.86 +0.3
Or see this region's nucleotide sequence