Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27915

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27910 and AO356_27915 are separated by 141 nucleotidesAO356_27915 and AO356_27920 are separated by 105 nucleotides AO356_27910: AO356_27910 - feruloyl-CoA synthase, at 6,367,669 to 6,369,546 _27910 AO356_27915: AO356_27915 - salicylaldehyde dehydrogenase, at 6,369,688 to 6,371,136 _27915 AO356_27920: AO356_27920 - p-hydroxycinnamoyl CoA hydratase/lyase, at 6,371,242 to 6,372,072 _27920 Position (kb) 6369 6370 6371 6372Strain fitness (log2 ratio) -1 0 1at 6368.730 kb on + strand, within AO356_27910at 6368.730 kb on + strand, within AO356_27910at 6368.730 kb on + strand, within AO356_27910at 6368.731 kb on - strand, within AO356_27910at 6368.823 kb on + strand, within AO356_27910at 6368.823 kb on + strand, within AO356_27910at 6368.823 kb on + strand, within AO356_27910at 6368.823 kb on + strand, within AO356_27910at 6368.824 kb on - strand, within AO356_27910at 6368.824 kb on - strand, within AO356_27910at 6368.824 kb on - strand, within AO356_27910at 6368.824 kb on - strand, within AO356_27910at 6368.824 kb on - strand, within AO356_27910at 6369.025 kb on + strand, within AO356_27910at 6369.173 kb on + strand, within AO356_27910at 6369.254 kb on + strand, within AO356_27910at 6369.254 kb on + strand, within AO356_27910at 6369.255 kb on - strand, within AO356_27910at 6369.255 kb on - strand, within AO356_27910at 6369.306 kb on - strand, within AO356_27910at 6369.548 kb on + strandat 6369.548 kb on + strandat 6369.548 kb on + strandat 6369.627 kb on + strandat 6369.628 kb on - strandat 6369.628 kb on - strandat 6370.307 kb on + strand, within AO356_27915at 6370.848 kb on - strand, within AO356_27915at 6371.252 kb on + strandat 6371.252 kb on + strandat 6371.253 kb on - strandat 6371.357 kb on + strand, within AO356_27920at 6371.357 kb on + strand, within AO356_27920at 6371.363 kb on + strand, within AO356_27920at 6371.364 kb on - strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.564 kb on + strand, within AO356_27920at 6371.565 kb on - strand, within AO356_27920at 6371.565 kb on - strand, within AO356_27920at 6371.565 kb on - strand, within AO356_27920at 6371.567 kb on + strand, within AO356_27920at 6371.567 kb on + strand, within AO356_27920at 6371.760 kb on - strand, within AO356_27920at 6371.760 kb on - strand, within AO356_27920at 6371.760 kb on - strand, within AO356_27920at 6371.849 kb on + strand, within AO356_27920at 6371.850 kb on - strand, within AO356_27920at 6372.062 kb on + strandat 6372.063 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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6,368,730 + AO356_27910 0.56 -0.2
6,368,730 + AO356_27910 0.56 +0.4
6,368,730 + AO356_27910 0.56 +0.3
6,368,731 - AO356_27910 0.57 -1.0
6,368,823 + AO356_27910 0.61 +0.1
6,368,823 + AO356_27910 0.61 +0.5
6,368,823 + AO356_27910 0.61 -0.3
6,368,823 + AO356_27910 0.61 +0.7
6,368,824 - AO356_27910 0.62 +0.7
6,368,824 - AO356_27910 0.62 +0.6
6,368,824 - AO356_27910 0.62 -0.5
6,368,824 - AO356_27910 0.62 -0.1
6,368,824 - AO356_27910 0.62 +0.8
6,369,025 + AO356_27910 0.72 +0.5
6,369,173 + AO356_27910 0.80 +0.7
6,369,254 + AO356_27910 0.84 -0.1
6,369,254 + AO356_27910 0.84 +0.3
6,369,255 - AO356_27910 0.84 +0.9
6,369,255 - AO356_27910 0.84 +0.6
6,369,306 - AO356_27910 0.87 +0.9
6,369,548 + +0.1
6,369,548 + -0.4
6,369,548 + +0.3
6,369,627 + +0.3
6,369,628 - +0.4
6,369,628 - +0.9
6,370,307 + AO356_27915 0.43 -0.5
6,370,848 - AO356_27915 0.80 +0.2
6,371,252 + +0.7
6,371,252 + +0.6
6,371,253 - +0.1
6,371,357 + AO356_27920 0.14 +1.1
6,371,357 + AO356_27920 0.14 +0.2
6,371,363 + AO356_27920 0.15 +1.6
6,371,364 - AO356_27920 0.15 -1.1
6,371,564 + AO356_27920 0.39 +0.2
6,371,564 + AO356_27920 0.39 -0.3
6,371,564 + AO356_27920 0.39 +0.8
6,371,564 + AO356_27920 0.39 +0.5
6,371,564 + AO356_27920 0.39 +0.8
6,371,565 - AO356_27920 0.39 -0.2
6,371,565 - AO356_27920 0.39 -0.1
6,371,565 - AO356_27920 0.39 +1.3
6,371,567 + AO356_27920 0.39 -1.0
6,371,567 + AO356_27920 0.39 +0.6
6,371,760 - AO356_27920 0.62 -0.2
6,371,760 - AO356_27920 0.62 +0.0
6,371,760 - AO356_27920 0.62 +0.4
6,371,849 + AO356_27920 0.73 +0.0
6,371,850 - AO356_27920 0.73 +0.4
6,372,062 + -0.2
6,372,063 - +0.1

Or see this region's nucleotide sequence