Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26485

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26480 and AO356_26485 are separated by 55 nucleotidesAO356_26485 and AO356_26490 are separated by 5 nucleotides AO356_26480: AO356_26480 - hypothetical protein, at 6,006,361 to 6,016,395 _26480 AO356_26485: AO356_26485 - hypothetical protein, at 6,016,451 to 6,016,969 _26485 AO356_26490: AO356_26490 - serine hydrolase, at 6,016,975 to 6,018,489 _26490 Position (kb) 6016 6017Strain fitness (log2 ratio) -1 0 1at 6015.629 kb on + strandat 6015.929 kb on - strandat 6016.043 kb on + strandat 6016.116 kb on - strandat 6016.123 kb on + strandat 6016.124 kb on - strandat 6016.297 kb on - strandat 6016.359 kb on - strandat 6016.528 kb on + strand, within AO356_26485at 6016.676 kb on + strand, within AO356_26485at 6016.827 kb on - strand, within AO356_26485at 6016.975 kb on - strandat 6017.221 kb on - strand, within AO356_26490at 6017.221 kb on - strand, within AO356_26490at 6017.658 kb on - strand, within AO356_26490at 6017.756 kb on - strand, within AO356_26490at 6017.756 kb on - strand, within AO356_26490at 6017.948 kb on + strand, within AO356_26490

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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6,015,629 + +0.1
6,015,929 - -1.1
6,016,043 + +0.9
6,016,116 - +0.6
6,016,123 + +1.1
6,016,124 - -0.0
6,016,297 - -0.0
6,016,359 - +1.5
6,016,528 + AO356_26485 0.15 +0.0
6,016,676 + AO356_26485 0.43 +1.5
6,016,827 - AO356_26485 0.72 +0.5
6,016,975 - -0.3
6,017,221 - AO356_26490 0.16 -0.2
6,017,221 - AO356_26490 0.16 +1.1
6,017,658 - AO356_26490 0.45 +0.5
6,017,756 - AO356_26490 0.52 -0.5
6,017,756 - AO356_26490 0.52 -0.6
6,017,948 + AO356_26490 0.64 -0.4

Or see this region's nucleotide sequence