Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23315 and AO356_23320 are separated by 326 nucleotides AO356_23320 and AO356_23325 are separated by 232 nucleotides
AO356_23315: AO356_23315 - toxin, at 5,224,641 to 5,228,963
_23315
AO356_23320: AO356_23320 - 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase, at 5,229,290 to 5,230,405
_23320
AO356_23325: AO356_23325 - short-chain dehydrogenase, at 5,230,638 to 5,231,405
_23325
Position (kb) 5229
5230
5231 Strain fitness (log2 ratio) -2
-1
0
1 at 5228.338 kb on + strand, within AO356_23315 at 5228.344 kb on + strand, within AO356_23315 at 5228.345 kb on - strand, within AO356_23315 at 5228.449 kb on + strand, within AO356_23315 at 5228.525 kb on + strand, within AO356_23315 at 5228.525 kb on + strand, within AO356_23315 at 5228.526 kb on - strand, within AO356_23315 at 5228.558 kb on - strand at 5228.599 kb on + strand at 5228.599 kb on + strand at 5228.599 kb on + strand at 5228.599 kb on + strand at 5228.600 kb on - strand at 5228.600 kb on - strand at 5228.600 kb on - strand at 5228.695 kb on + strand at 5228.695 kb on + strand at 5228.696 kb on - strand at 5229.019 kb on - strand at 5229.022 kb on + strand at 5229.022 kb on + strand at 5229.022 kb on + strand at 5229.022 kb on + strand at 5229.022 kb on + strand at 5229.022 kb on + strand at 5229.022 kb on + strand at 5229.023 kb on - strand at 5229.023 kb on - strand at 5229.023 kb on - strand at 5229.045 kb on + strand at 5229.083 kb on + strand at 5229.084 kb on - strand at 5229.099 kb on + strand at 5229.100 kb on - strand at 5229.100 kb on - strand at 5229.106 kb on + strand at 5229.106 kb on + strand at 5229.107 kb on - strand at 5229.107 kb on - strand at 5229.156 kb on + strand at 5229.292 kb on - strand at 5229.453 kb on + strand, within AO356_23320 at 5229.453 kb on + strand, within AO356_23320 at 5229.633 kb on + strand, within AO356_23320 at 5230.011 kb on + strand, within AO356_23320 at 5230.011 kb on + strand, within AO356_23320 at 5230.011 kb on + strand, within AO356_23320 at 5230.011 kb on + strand, within AO356_23320 at 5230.684 kb on + strand at 5230.684 kb on + strand at 5230.684 kb on + strand at 5230.685 kb on - strand at 5230.685 kb on - strand at 5230.685 kb on - strand at 5230.709 kb on - strand at 5230.924 kb on + strand, within AO356_23325 at 5230.924 kb on + strand, within AO356_23325 at 5230.924 kb on + strand, within AO356_23325 at 5230.925 kb on - strand, within AO356_23325 at 5230.925 kb on - strand, within AO356_23325 at 5230.925 kb on - strand, within AO356_23325 at 5230.925 kb on - strand, within AO356_23325
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 5,228,338 + AO356_23315 0.86 +0.4 5,228,344 + AO356_23315 0.86 +0.5 5,228,345 - AO356_23315 0.86 +0.6 5,228,449 + AO356_23315 0.88 +0.7 5,228,525 + AO356_23315 0.90 -2.1 5,228,525 + AO356_23315 0.90 -0.3 5,228,526 - AO356_23315 0.90 -0.7 5,228,558 - +1.1 5,228,599 + -0.1 5,228,599 + -0.8 5,228,599 + -0.1 5,228,599 + +0.7 5,228,600 - -0.5 5,228,600 - -0.1 5,228,600 - -1.1 5,228,695 + -0.5 5,228,695 + +0.3 5,228,696 - -1.3 5,229,019 - -0.4 5,229,022 + +0.2 5,229,022 + -0.2 5,229,022 + -0.1 5,229,022 + -0.3 5,229,022 + -0.4 5,229,022 + +0.5 5,229,022 + -0.2 5,229,023 - +0.8 5,229,023 - +0.7 5,229,023 - -0.3 5,229,045 + +0.0 5,229,083 + -2.5 5,229,084 - +0.7 5,229,099 + -0.5 5,229,100 - -0.7 5,229,100 - -0.5 5,229,106 + -1.5 5,229,106 + +0.2 5,229,107 - +0.2 5,229,107 - -0.3 5,229,156 + +0.9 5,229,292 - +0.4 5,229,453 + AO356_23320 0.15 +1.0 5,229,453 + AO356_23320 0.15 +1.1 5,229,633 + AO356_23320 0.31 +0.7 5,230,011 + AO356_23320 0.65 +0.8 5,230,011 + AO356_23320 0.65 -1.0 5,230,011 + AO356_23320 0.65 +0.4 5,230,011 + AO356_23320 0.65 +0.1 5,230,684 + +1.2 5,230,684 + -1.1 5,230,684 + +1.2 5,230,685 - -1.1 5,230,685 - -0.2 5,230,685 - -0.6 5,230,709 - +0.8 5,230,924 + AO356_23325 0.37 -0.3 5,230,924 + AO356_23325 0.37 +1.7 5,230,924 + AO356_23325 0.37 +0.9 5,230,925 - AO356_23325 0.37 +0.2 5,230,925 - AO356_23325 0.37 +0.4 5,230,925 - AO356_23325 0.37 +0.3 5,230,925 - AO356_23325 0.37 +0.1
Or see this region's nucleotide sequence