Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20985

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20980 and AO356_20985 are separated by 670 nucleotidesAO356_20985 and AO356_20990 are separated by 72 nucleotidesAO356_20990 and AO356_20995 are separated by 30 nucleotidesAO356_20995 and AO356_21000 are separated by 238 nucleotides AO356_20980: AO356_20980 - transporter, at 4,669,127 to 4,670,017 _20980 AO356_20985: AO356_20985 - 16S ribosomal RNA, at 4,670,688 to 4,672,233 _20985 AO356_20990: AO356_20990 - tRNA-Ile, at 4,672,306 to 4,672,382 _20990 AO356_20995: AO356_20995 - tRNA-Ala, at 4,672,413 to 4,672,488 _20995 AO356_21000: AO356_21000 - 23S ribosomal RNA, at 4,672,727 to 4,675,642 _21000 Position (kb) 4670 4671 4672 4673Strain fitness (log2 ratio) -1 0 1 2at 4669.744 kb on + strand, within AO356_20980at 4669.744 kb on + strand, within AO356_20980at 4669.745 kb on - strand, within AO356_20980at 4669.745 kb on - strand, within AO356_20980at 4669.745 kb on - strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.746 kb on + strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.747 kb on - strand, within AO356_20980at 4669.762 kb on + strand, within AO356_20980at 4669.762 kb on + strand, within AO356_20980at 4669.782 kb on + strand, within AO356_20980at 4669.835 kb on + strand, within AO356_20980at 4669.836 kb on - strand, within AO356_20980at 4669.836 kb on - strand, within AO356_20980at 4669.883 kb on - strand, within AO356_20980at 4669.883 kb on - strand, within AO356_20980at 4669.955 kb on + strandat 4669.956 kb on - strandat 4669.961 kb on + strandat 4669.962 kb on - strandat 4670.019 kb on - strandat 4670.019 kb on - strandat 4670.019 kb on - strandat 4670.037 kb on + strandat 4670.037 kb on + strandat 4670.038 kb on - strandat 4670.038 kb on - strandat 4670.068 kb on - strandat 4670.094 kb on - strandat 4670.095 kb on + strandat 4670.095 kb on + strandat 4670.095 kb on + strandat 4670.095 kb on + strandat 4670.096 kb on - strandat 4670.096 kb on - strandat 4670.096 kb on - strandat 4670.096 kb on - strandat 4670.096 kb on - strandat 4670.096 kb on - strandat 4670.097 kb on + strandat 4670.097 kb on + strandat 4670.097 kb on + strandat 4670.098 kb on - strandat 4670.098 kb on - strandat 4670.098 kb on - strandat 4670.107 kb on - strandat 4670.110 kb on + strandat 4670.110 kb on + strandat 4670.110 kb on + strandat 4670.110 kb on + strandat 4670.110 kb on + strandat 4670.111 kb on - strandat 4670.111 kb on - strandat 4670.111 kb on - strandat 4670.111 kb on - strandat 4670.111 kb on - strandat 4670.133 kb on + strandat 4670.289 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,669,744 + AO356_20980 0.69 +0.1
4,669,744 + AO356_20980 0.69 -0.6
4,669,745 - AO356_20980 0.69 -0.2
4,669,745 - AO356_20980 0.69 +0.1
4,669,745 - AO356_20980 0.69 +0.1
4,669,746 + AO356_20980 0.69 +0.2
4,669,746 + AO356_20980 0.69 +2.1
4,669,746 + AO356_20980 0.69 +0.5
4,669,746 + AO356_20980 0.69 +0.2
4,669,746 + AO356_20980 0.69 +0.4
4,669,746 + AO356_20980 0.69 +0.5
4,669,746 + AO356_20980 0.69 +1.3
4,669,746 + AO356_20980 0.69 +0.1
4,669,746 + AO356_20980 0.69 +0.3
4,669,746 + AO356_20980 0.69 +0.4
4,669,746 + AO356_20980 0.69 -1.3
4,669,746 + AO356_20980 0.69 -0.2
4,669,747 - AO356_20980 0.70 -0.6
4,669,747 - AO356_20980 0.70 -1.1
4,669,747 - AO356_20980 0.70 +0.7
4,669,747 - AO356_20980 0.70 +0.2
4,669,747 - AO356_20980 0.70 -0.4
4,669,747 - AO356_20980 0.70 +0.2
4,669,747 - AO356_20980 0.70 -0.8
4,669,747 - AO356_20980 0.70 +0.3
4,669,747 - AO356_20980 0.70 +0.6
4,669,747 - AO356_20980 0.70 -0.3
4,669,747 - AO356_20980 0.70 +0.4
4,669,762 + AO356_20980 0.71 -0.1
4,669,762 + AO356_20980 0.71 +0.4
4,669,782 + AO356_20980 0.74 +0.4
4,669,835 + AO356_20980 0.79 +1.3
4,669,836 - AO356_20980 0.80 -0.0
4,669,836 - AO356_20980 0.80 -0.0
4,669,883 - AO356_20980 0.85 +1.5
4,669,883 - AO356_20980 0.85 +0.3
4,669,955 + -0.6
4,669,956 - -0.2
4,669,961 + +0.4
4,669,962 - +0.2
4,670,019 - +0.6
4,670,019 - +1.9
4,670,019 - +0.4
4,670,037 + +0.0
4,670,037 + -0.0
4,670,038 - +0.3
4,670,038 - +0.6
4,670,068 - -0.5
4,670,094 - -1.2
4,670,095 + +1.3
4,670,095 + +0.5
4,670,095 + +0.2
4,670,095 + -0.7
4,670,096 - +0.1
4,670,096 - +0.1
4,670,096 - +0.5
4,670,096 - +0.1
4,670,096 - +0.9
4,670,096 - +0.5
4,670,097 + -0.8
4,670,097 + -0.1
4,670,097 + +0.4
4,670,098 - +0.9
4,670,098 - +0.9
4,670,098 - +0.6
4,670,107 - -1.5
4,670,110 + -0.6
4,670,110 + +0.1
4,670,110 + +0.2
4,670,110 + -0.2
4,670,110 + -0.0
4,670,111 - +0.1
4,670,111 - +1.0
4,670,111 - -0.3
4,670,111 - +2.2
4,670,111 - +1.0
4,670,133 + +0.1
4,670,289 + +0.2

Or see this region's nucleotide sequence