Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19970

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19960 and AO356_19965 are separated by 8 nucleotidesAO356_19965 and AO356_19970 overlap by 1 nucleotidesAO356_19970 and AO356_19975 overlap by 7 nucleotides AO356_19960: AO356_19960 - pilus assembly protein, at 4,469,234 to 4,470,550 _19960 AO356_19965: AO356_19965 - pilus assembly protein TadG, at 4,470,559 to 4,471,038 _19965 AO356_19970: AO356_19970 - hypothetical protein, at 4,471,038 to 4,471,532 _19970 AO356_19975: AO356_19975 - chemotaxis protein CheY, at 4,471,526 to 4,472,746 _19975 Position (kb) 4471 4472Strain fitness (log2 ratio) -1 0 1 2at 4470.041 kb on + strand, within AO356_19960at 4470.041 kb on + strand, within AO356_19960at 4470.041 kb on + strand, within AO356_19960at 4470.041 kb on + strand, within AO356_19960at 4470.042 kb on - strand, within AO356_19960at 4470.042 kb on - strand, within AO356_19960at 4470.042 kb on - strand, within AO356_19960at 4470.042 kb on - strand, within AO356_19960at 4470.042 kb on - strand, within AO356_19960at 4470.042 kb on - strand, within AO356_19960at 4470.113 kb on + strand, within AO356_19960at 4470.206 kb on + strand, within AO356_19960at 4470.207 kb on - strand, within AO356_19960at 4470.207 kb on - strand, within AO356_19960at 4470.207 kb on - strand, within AO356_19960at 4470.207 kb on - strand, within AO356_19960at 4470.207 kb on - strand, within AO356_19960at 4470.368 kb on + strand, within AO356_19960at 4470.369 kb on - strand, within AO356_19960at 4470.369 kb on - strand, within AO356_19960at 4470.453 kb on + strandat 4470.453 kb on + strandat 4470.453 kb on + strandat 4470.463 kb on + strandat 4470.463 kb on + strandat 4470.513 kb on - strandat 4470.548 kb on + strandat 4470.683 kb on - strand, within AO356_19965at 4470.689 kb on - strand, within AO356_19965at 4470.814 kb on + strand, within AO356_19965at 4470.815 kb on - strand, within AO356_19965at 4470.915 kb on + strand, within AO356_19965at 4470.915 kb on + strand, within AO356_19965at 4470.915 kb on + strand, within AO356_19965at 4470.915 kb on + strand, within AO356_19965at 4470.915 kb on + strand, within AO356_19965at 4470.915 kb on + strand, within AO356_19965at 4470.916 kb on - strand, within AO356_19965at 4470.919 kb on + strand, within AO356_19965at 4470.919 kb on + strand, within AO356_19965at 4470.919 kb on + strand, within AO356_19965at 4470.920 kb on - strand, within AO356_19965at 4470.920 kb on - strand, within AO356_19965at 4470.920 kb on - strand, within AO356_19965at 4470.920 kb on - strand, within AO356_19965at 4471.065 kb on + strandat 4471.065 kb on + strandat 4471.065 kb on + strandat 4471.066 kb on - strandat 4471.141 kb on - strand, within AO356_19970at 4471.311 kb on + strand, within AO356_19970at 4471.312 kb on - strand, within AO356_19970at 4471.312 kb on - strand, within AO356_19970at 4471.386 kb on + strand, within AO356_19970at 4471.387 kb on - strand, within AO356_19970at 4471.387 kb on - strand, within AO356_19970at 4471.451 kb on + strand, within AO356_19970at 4471.451 kb on + strand, within AO356_19970at 4471.451 kb on + strand, within AO356_19970at 4471.606 kb on + strandat 4471.606 kb on + strandat 4471.606 kb on + strandat 4471.701 kb on - strand, within AO356_19975at 4472.056 kb on + strand, within AO356_19975at 4472.102 kb on + strand, within AO356_19975at 4472.303 kb on + strand, within AO356_19975at 4472.303 kb on + strand, within AO356_19975at 4472.304 kb on - strand, within AO356_19975at 4472.304 kb on - strand, within AO356_19975at 4472.304 kb on - strand, within AO356_19975at 4472.381 kb on + strand, within AO356_19975at 4472.381 kb on + strand, within AO356_19975at 4472.381 kb on + strand, within AO356_19975at 4472.382 kb on - strand, within AO356_19975at 4472.382 kb on - strand, within AO356_19975at 4472.382 kb on - strand, within AO356_19975

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,470,041 + AO356_19960 0.61 -0.6
4,470,041 + AO356_19960 0.61 -0.2
4,470,041 + AO356_19960 0.61 +0.3
4,470,041 + AO356_19960 0.61 -0.2
4,470,042 - AO356_19960 0.61 +0.7
4,470,042 - AO356_19960 0.61 -0.7
4,470,042 - AO356_19960 0.61 +0.1
4,470,042 - AO356_19960 0.61 +0.4
4,470,042 - AO356_19960 0.61 +0.7
4,470,042 - AO356_19960 0.61 +0.2
4,470,113 + AO356_19960 0.67 -0.2
4,470,206 + AO356_19960 0.74 +0.3
4,470,207 - AO356_19960 0.74 -0.5
4,470,207 - AO356_19960 0.74 +0.4
4,470,207 - AO356_19960 0.74 -0.9
4,470,207 - AO356_19960 0.74 +0.1
4,470,207 - AO356_19960 0.74 +0.2
4,470,368 + AO356_19960 0.86 +0.1
4,470,369 - AO356_19960 0.86 +0.9
4,470,369 - AO356_19960 0.86 +1.1
4,470,453 + +0.8
4,470,453 + -0.7
4,470,453 + -0.3
4,470,463 + +0.9
4,470,463 + +0.7
4,470,513 - +0.4
4,470,548 + -0.5
4,470,683 - AO356_19965 0.26 +1.4
4,470,689 - AO356_19965 0.27 +0.3
4,470,814 + AO356_19965 0.53 -0.2
4,470,815 - AO356_19965 0.53 +0.1
4,470,915 + AO356_19965 0.74 -0.9
4,470,915 + AO356_19965 0.74 +0.6
4,470,915 + AO356_19965 0.74 -1.1
4,470,915 + AO356_19965 0.74 -0.1
4,470,915 + AO356_19965 0.74 +0.0
4,470,915 + AO356_19965 0.74 -0.3
4,470,916 - AO356_19965 0.74 +0.6
4,470,919 + AO356_19965 0.75 +0.4
4,470,919 + AO356_19965 0.75 -0.4
4,470,919 + AO356_19965 0.75 -0.1
4,470,920 - AO356_19965 0.75 +0.1
4,470,920 - AO356_19965 0.75 -0.5
4,470,920 - AO356_19965 0.75 -0.5
4,470,920 - AO356_19965 0.75 -0.2
4,471,065 + -0.3
4,471,065 + -0.4
4,471,065 + -0.0
4,471,066 - +0.5
4,471,141 - AO356_19970 0.21 +0.7
4,471,311 + AO356_19970 0.55 +0.1
4,471,312 - AO356_19970 0.55 -1.3
4,471,312 - AO356_19970 0.55 -0.1
4,471,386 + AO356_19970 0.70 -0.0
4,471,387 - AO356_19970 0.71 +1.0
4,471,387 - AO356_19970 0.71 +1.2
4,471,451 + AO356_19970 0.83 +1.0
4,471,451 + AO356_19970 0.83 +1.4
4,471,451 + AO356_19970 0.83 +0.3
4,471,606 + -0.3
4,471,606 + +1.1
4,471,606 + -0.4
4,471,701 - AO356_19975 0.14 +1.9
4,472,056 + AO356_19975 0.43 +0.5
4,472,102 + AO356_19975 0.47 +1.6
4,472,303 + AO356_19975 0.64 -0.1
4,472,303 + AO356_19975 0.64 -0.4
4,472,304 - AO356_19975 0.64 -0.1
4,472,304 - AO356_19975 0.64 -0.3
4,472,304 - AO356_19975 0.64 -0.8
4,472,381 + AO356_19975 0.70 +0.8
4,472,381 + AO356_19975 0.70 -0.5
4,472,381 + AO356_19975 0.70 -0.2
4,472,382 - AO356_19975 0.70 +0.3
4,472,382 - AO356_19975 0.70 -0.7
4,472,382 - AO356_19975 0.70 +1.0

Or see this region's nucleotide sequence