Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19960 and AO356_19965 are separated by 8 nucleotides AO356_19965 and AO356_19970 overlap by 1 nucleotides AO356_19970 and AO356_19975 overlap by 7 nucleotides
AO356_19960: AO356_19960 - pilus assembly protein, at 4,469,234 to 4,470,550
_19960
AO356_19965: AO356_19965 - pilus assembly protein TadG, at 4,470,559 to 4,471,038
_19965
AO356_19970: AO356_19970 - hypothetical protein, at 4,471,038 to 4,471,532
_19970
AO356_19975: AO356_19975 - chemotaxis protein CheY, at 4,471,526 to 4,472,746
_19975
Position (kb)
4471
4472 Strain fitness (log2 ratio)
-1
0
1
2 at 4470.041 kb on + strand, within AO356_19960 at 4470.041 kb on + strand, within AO356_19960 at 4470.041 kb on + strand, within AO356_19960 at 4470.041 kb on + strand, within AO356_19960 at 4470.042 kb on - strand, within AO356_19960 at 4470.042 kb on - strand, within AO356_19960 at 4470.042 kb on - strand, within AO356_19960 at 4470.042 kb on - strand, within AO356_19960 at 4470.042 kb on - strand, within AO356_19960 at 4470.042 kb on - strand, within AO356_19960 at 4470.113 kb on + strand, within AO356_19960 at 4470.206 kb on + strand, within AO356_19960 at 4470.207 kb on - strand, within AO356_19960 at 4470.207 kb on - strand, within AO356_19960 at 4470.207 kb on - strand, within AO356_19960 at 4470.207 kb on - strand, within AO356_19960 at 4470.207 kb on - strand, within AO356_19960 at 4470.368 kb on + strand, within AO356_19960 at 4470.369 kb on - strand, within AO356_19960 at 4470.369 kb on - strand, within AO356_19960 at 4470.453 kb on + strand at 4470.453 kb on + strand at 4470.453 kb on + strand at 4470.463 kb on + strand at 4470.463 kb on + strand at 4470.513 kb on - strand at 4470.548 kb on + strand at 4470.683 kb on - strand, within AO356_19965 at 4470.689 kb on - strand, within AO356_19965 at 4470.814 kb on + strand, within AO356_19965 at 4470.815 kb on - strand, within AO356_19965 at 4470.915 kb on + strand, within AO356_19965 at 4470.915 kb on + strand, within AO356_19965 at 4470.915 kb on + strand, within AO356_19965 at 4470.915 kb on + strand, within AO356_19965 at 4470.915 kb on + strand, within AO356_19965 at 4470.915 kb on + strand, within AO356_19965 at 4470.916 kb on - strand, within AO356_19965 at 4470.919 kb on + strand, within AO356_19965 at 4470.919 kb on + strand, within AO356_19965 at 4470.919 kb on + strand, within AO356_19965 at 4470.920 kb on - strand, within AO356_19965 at 4470.920 kb on - strand, within AO356_19965 at 4470.920 kb on - strand, within AO356_19965 at 4470.920 kb on - strand, within AO356_19965 at 4471.065 kb on + strand at 4471.065 kb on + strand at 4471.065 kb on + strand at 4471.066 kb on - strand at 4471.141 kb on - strand, within AO356_19970 at 4471.311 kb on + strand, within AO356_19970 at 4471.312 kb on - strand, within AO356_19970 at 4471.312 kb on - strand, within AO356_19970 at 4471.386 kb on + strand, within AO356_19970 at 4471.387 kb on - strand, within AO356_19970 at 4471.387 kb on - strand, within AO356_19970 at 4471.451 kb on + strand, within AO356_19970 at 4471.451 kb on + strand, within AO356_19970 at 4471.451 kb on + strand, within AO356_19970 at 4471.606 kb on + strand at 4471.606 kb on + strand at 4471.606 kb on + strand at 4471.701 kb on - strand, within AO356_19975 at 4472.056 kb on + strand, within AO356_19975 at 4472.102 kb on + strand, within AO356_19975 at 4472.303 kb on + strand, within AO356_19975 at 4472.303 kb on + strand, within AO356_19975 at 4472.304 kb on - strand, within AO356_19975 at 4472.304 kb on - strand, within AO356_19975 at 4472.304 kb on - strand, within AO356_19975 at 4472.381 kb on + strand, within AO356_19975 at 4472.381 kb on + strand, within AO356_19975 at 4472.381 kb on + strand, within AO356_19975 at 4472.382 kb on - strand, within AO356_19975 at 4472.382 kb on - strand, within AO356_19975 at 4472.382 kb on - strand, within AO356_19975
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 4,470,041 + AO356_19960 0.61 -0.6 4,470,041 + AO356_19960 0.61 -0.2 4,470,041 + AO356_19960 0.61 +0.3 4,470,041 + AO356_19960 0.61 -0.2 4,470,042 - AO356_19960 0.61 +0.7 4,470,042 - AO356_19960 0.61 -0.7 4,470,042 - AO356_19960 0.61 +0.1 4,470,042 - AO356_19960 0.61 +0.4 4,470,042 - AO356_19960 0.61 +0.7 4,470,042 - AO356_19960 0.61 +0.2 4,470,113 + AO356_19960 0.67 -0.2 4,470,206 + AO356_19960 0.74 +0.3 4,470,207 - AO356_19960 0.74 -0.5 4,470,207 - AO356_19960 0.74 +0.4 4,470,207 - AO356_19960 0.74 -0.9 4,470,207 - AO356_19960 0.74 +0.1 4,470,207 - AO356_19960 0.74 +0.2 4,470,368 + AO356_19960 0.86 +0.1 4,470,369 - AO356_19960 0.86 +0.9 4,470,369 - AO356_19960 0.86 +1.1 4,470,453 + +0.8 4,470,453 + -0.7 4,470,453 + -0.3 4,470,463 + +0.9 4,470,463 + +0.7 4,470,513 - +0.4 4,470,548 + -0.5 4,470,683 - AO356_19965 0.26 +1.4 4,470,689 - AO356_19965 0.27 +0.3 4,470,814 + AO356_19965 0.53 -0.2 4,470,815 - AO356_19965 0.53 +0.1 4,470,915 + AO356_19965 0.74 -0.9 4,470,915 + AO356_19965 0.74 +0.6 4,470,915 + AO356_19965 0.74 -1.1 4,470,915 + AO356_19965 0.74 -0.1 4,470,915 + AO356_19965 0.74 +0.0 4,470,915 + AO356_19965 0.74 -0.3 4,470,916 - AO356_19965 0.74 +0.6 4,470,919 + AO356_19965 0.75 +0.4 4,470,919 + AO356_19965 0.75 -0.4 4,470,919 + AO356_19965 0.75 -0.1 4,470,920 - AO356_19965 0.75 +0.1 4,470,920 - AO356_19965 0.75 -0.5 4,470,920 - AO356_19965 0.75 -0.5 4,470,920 - AO356_19965 0.75 -0.2 4,471,065 + -0.3 4,471,065 + -0.4 4,471,065 + -0.0 4,471,066 - +0.5 4,471,141 - AO356_19970 0.21 +0.7 4,471,311 + AO356_19970 0.55 +0.1 4,471,312 - AO356_19970 0.55 -1.3 4,471,312 - AO356_19970 0.55 -0.1 4,471,386 + AO356_19970 0.70 -0.0 4,471,387 - AO356_19970 0.71 +1.0 4,471,387 - AO356_19970 0.71 +1.2 4,471,451 + AO356_19970 0.83 +1.0 4,471,451 + AO356_19970 0.83 +1.4 4,471,451 + AO356_19970 0.83 +0.3 4,471,606 + -0.3 4,471,606 + +1.1 4,471,606 + -0.4 4,471,701 - AO356_19975 0.14 +1.9 4,472,056 + AO356_19975 0.43 +0.5 4,472,102 + AO356_19975 0.47 +1.6 4,472,303 + AO356_19975 0.64 -0.1 4,472,303 + AO356_19975 0.64 -0.4 4,472,304 - AO356_19975 0.64 -0.1 4,472,304 - AO356_19975 0.64 -0.3 4,472,304 - AO356_19975 0.64 -0.8 4,472,381 + AO356_19975 0.70 +0.8 4,472,381 + AO356_19975 0.70 -0.5 4,472,381 + AO356_19975 0.70 -0.2 4,472,382 - AO356_19975 0.70 +0.3 4,472,382 - AO356_19975 0.70 -0.7 4,472,382 - AO356_19975 0.70 +1.0
Or see this region's nucleotide sequence