Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15090

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15080 and AO356_15085 are separated by 1 nucleotidesAO356_15085 and AO356_15090 are separated by 89 nucleotidesAO356_15090 and AO356_15095 overlap by 11 nucleotides AO356_15080: AO356_15080 - phosphatidate cytidylyltransferase, at 3,410,671 to 3,411,603 _15080 AO356_15085: AO356_15085 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 3,411,605 to 3,412,225 _15085 AO356_15090: AO356_15090 - hypothetical protein, at 3,412,315 to 3,412,770 _15090 AO356_15095: AO356_15095 - serine/threonine protein phosphatase, at 3,412,760 to 3,414,103 _15095 Position (kb) 3412 3413Strain fitness (log2 ratio) -2 -1 0 1at 3411.377 kb on + strand, within AO356_15080at 3411.377 kb on + strand, within AO356_15080at 3411.392 kb on + strand, within AO356_15080at 3411.393 kb on - strand, within AO356_15080at 3411.393 kb on - strand, within AO356_15080at 3411.591 kb on + strandat 3411.591 kb on + strandat 3411.591 kb on + strandat 3411.592 kb on - strandat 3411.592 kb on - strandat 3411.592 kb on - strandat 3411.819 kb on + strand, within AO356_15085at 3411.819 kb on + strand, within AO356_15085at 3411.819 kb on + strand, within AO356_15085at 3411.819 kb on + strand, within AO356_15085at 3411.819 kb on + strand, within AO356_15085at 3411.819 kb on + strand, within AO356_15085at 3411.820 kb on - strand, within AO356_15085at 3411.820 kb on - strand, within AO356_15085at 3411.820 kb on - strand, within AO356_15085at 3411.820 kb on - strand, within AO356_15085at 3411.820 kb on - strand, within AO356_15085at 3411.860 kb on - strand, within AO356_15085at 3411.933 kb on + strand, within AO356_15085at 3411.993 kb on + strand, within AO356_15085at 3411.993 kb on + strand, within AO356_15085at 3411.994 kb on - strand, within AO356_15085at 3412.045 kb on + strand, within AO356_15085at 3412.086 kb on - strand, within AO356_15085at 3412.086 kb on - strand, within AO356_15085at 3412.119 kb on + strand, within AO356_15085at 3412.119 kb on + strand, within AO356_15085at 3412.119 kb on + strand, within AO356_15085at 3412.312 kb on + strandat 3412.312 kb on + strandat 3412.313 kb on - strandat 3412.313 kb on - strandat 3412.313 kb on - strandat 3412.316 kb on + strandat 3412.316 kb on + strandat 3412.316 kb on + strandat 3412.316 kb on + strandat 3412.317 kb on - strandat 3412.317 kb on - strandat 3412.317 kb on - strandat 3412.317 kb on - strandat 3412.317 kb on - strandat 3412.320 kb on + strandat 3412.321 kb on - strandat 3412.321 kb on - strandat 3412.321 kb on - strandat 3412.375 kb on + strand, within AO356_15090at 3412.375 kb on + strand, within AO356_15090at 3412.376 kb on - strand, within AO356_15090at 3412.376 kb on - strand, within AO356_15090at 3412.376 kb on - strand, within AO356_15090at 3412.384 kb on + strand, within AO356_15090at 3412.384 kb on + strand, within AO356_15090at 3412.384 kb on + strand, within AO356_15090at 3412.498 kb on - strand, within AO356_15090at 3412.499 kb on + strand, within AO356_15090at 3412.499 kb on + strand, within AO356_15090at 3412.499 kb on + strand, within AO356_15090at 3412.499 kb on + strand, within AO356_15090at 3412.499 kb on + strand, within AO356_15090at 3412.499 kb on + strand, within AO356_15090at 3412.499 kb on + strand, within AO356_15090at 3412.500 kb on - strand, within AO356_15090at 3412.500 kb on - strand, within AO356_15090at 3412.500 kb on - strand, within AO356_15090at 3412.580 kb on + strand, within AO356_15090at 3412.759 kb on - strandat 3412.793 kb on + strandat 3412.793 kb on + strandat 3412.794 kb on - strandat 3413.110 kb on + strand, within AO356_15095at 3413.235 kb on + strand, within AO356_15095at 3413.562 kb on + strand, within AO356_15095at 3413.562 kb on + strand, within AO356_15095at 3413.562 kb on + strand, within AO356_15095at 3413.562 kb on + strand, within AO356_15095at 3413.562 kb on + strand, within AO356_15095at 3413.563 kb on - strand, within AO356_15095at 3413.563 kb on - strand, within AO356_15095at 3413.563 kb on - strand, within AO356_15095at 3413.563 kb on - strand, within AO356_15095at 3413.563 kb on - strand, within AO356_15095at 3413.563 kb on - strand, within AO356_15095at 3413.563 kb on - strand, within AO356_15095at 3413.644 kb on - strand, within AO356_15095at 3413.644 kb on - strand, within AO356_15095

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,411,377 + AO356_15080 0.76 -0.4
3,411,377 + AO356_15080 0.76 -0.1
3,411,392 + AO356_15080 0.77 -0.6
3,411,393 - AO356_15080 0.77 -0.7
3,411,393 - AO356_15080 0.77 -0.3
3,411,591 + +0.2
3,411,591 + +0.3
3,411,591 + +0.0
3,411,592 - +0.3
3,411,592 - +0.4
3,411,592 - -0.8
3,411,819 + AO356_15085 0.34 -0.4
3,411,819 + AO356_15085 0.34 -0.0
3,411,819 + AO356_15085 0.34 -0.1
3,411,819 + AO356_15085 0.34 -0.4
3,411,819 + AO356_15085 0.34 +0.4
3,411,819 + AO356_15085 0.34 -0.0
3,411,820 - AO356_15085 0.35 +0.5
3,411,820 - AO356_15085 0.35 -0.0
3,411,820 - AO356_15085 0.35 +0.4
3,411,820 - AO356_15085 0.35 -0.5
3,411,820 - AO356_15085 0.35 +0.5
3,411,860 - AO356_15085 0.41 -0.1
3,411,933 + AO356_15085 0.53 +0.2
3,411,993 + AO356_15085 0.62 +0.3
3,411,993 + AO356_15085 0.62 -0.7
3,411,994 - AO356_15085 0.63 -0.6
3,412,045 + AO356_15085 0.71 -0.1
3,412,086 - AO356_15085 0.77 -1.4
3,412,086 - AO356_15085 0.77 +0.3
3,412,119 + AO356_15085 0.83 -0.2
3,412,119 + AO356_15085 0.83 -0.5
3,412,119 + AO356_15085 0.83 -0.4
3,412,312 + -1.8
3,412,312 + +1.2
3,412,313 - +0.4
3,412,313 - -0.0
3,412,313 - -0.7
3,412,316 + -0.1
3,412,316 + +0.3
3,412,316 + -1.2
3,412,316 + -0.1
3,412,317 - -0.8
3,412,317 - -0.1
3,412,317 - -0.8
3,412,317 - -0.9
3,412,317 - +0.6
3,412,320 + -0.9
3,412,321 - +0.1
3,412,321 - -0.0
3,412,321 - +1.3
3,412,375 + AO356_15090 0.13 +0.4
3,412,375 + AO356_15090 0.13 -0.3
3,412,376 - AO356_15090 0.13 +0.2
3,412,376 - AO356_15090 0.13 +0.6
3,412,376 - AO356_15090 0.13 +0.2
3,412,384 + AO356_15090 0.15 -0.0
3,412,384 + AO356_15090 0.15 +0.0
3,412,384 + AO356_15090 0.15 -0.1
3,412,498 - AO356_15090 0.40 +0.2
3,412,499 + AO356_15090 0.40 +0.4
3,412,499 + AO356_15090 0.40 +0.0
3,412,499 + AO356_15090 0.40 +0.2
3,412,499 + AO356_15090 0.40 +0.0
3,412,499 + AO356_15090 0.40 +0.0
3,412,499 + AO356_15090 0.40 +0.5
3,412,499 + AO356_15090 0.40 -0.0
3,412,500 - AO356_15090 0.41 +0.5
3,412,500 - AO356_15090 0.41 +0.6
3,412,500 - AO356_15090 0.41 +0.4
3,412,580 + AO356_15090 0.58 +0.2
3,412,759 - +0.3
3,412,793 + +0.3
3,412,793 + +0.3
3,412,794 - +0.3
3,413,110 + AO356_15095 0.26 +1.5
3,413,235 + AO356_15095 0.35 +0.8
3,413,562 + AO356_15095 0.60 +0.6
3,413,562 + AO356_15095 0.60 +0.3
3,413,562 + AO356_15095 0.60 +0.3
3,413,562 + AO356_15095 0.60 +0.0
3,413,562 + AO356_15095 0.60 +0.7
3,413,563 - AO356_15095 0.60 +0.1
3,413,563 - AO356_15095 0.60 +0.6
3,413,563 - AO356_15095 0.60 -0.3
3,413,563 - AO356_15095 0.60 -0.1
3,413,563 - AO356_15095 0.60 -0.1
3,413,563 - AO356_15095 0.60 +1.1
3,413,563 - AO356_15095 0.60 -0.1
3,413,644 - AO356_15095 0.66 -0.0
3,413,644 - AO356_15095 0.66 +0.3

Or see this region's nucleotide sequence