Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08585

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08580 and AO356_08585 are separated by 117 nucleotidesAO356_08585 and AO356_08590 are separated by 18 nucleotidesAO356_08590 and AO356_08595 are separated by 36 nucleotides AO356_08580: AO356_08580 - replicative DNA helicase, at 1,932,362 to 1,933,759 _08580 AO356_08585: AO356_08585 - 50S ribosomal protein L9, at 1,933,877 to 1,934,323 _08585 AO356_08590: AO356_08590 - hypothetical protein, at 1,934,342 to 1,935,232 _08590 AO356_08595: AO356_08595 - 30S ribosomal protein S18, at 1,935,269 to 1,935,499 _08595 Position (kb) 1933 1934 1935Strain fitness (log2 ratio) -1 0 1 2at 1933.879 kb on - strandat 1933.887 kb on - strandat 1933.938 kb on - strand, within AO356_08585at 1933.952 kb on + strand, within AO356_08585at 1934.041 kb on + strand, within AO356_08585at 1934.047 kb on + strand, within AO356_08585at 1934.048 kb on - strand, within AO356_08585at 1934.238 kb on + strand, within AO356_08585at 1934.239 kb on - strand, within AO356_08585at 1934.239 kb on - strand, within AO356_08585at 1934.239 kb on - strand, within AO356_08585at 1934.243 kb on - strand, within AO356_08585at 1934.267 kb on + strand, within AO356_08585at 1934.268 kb on - strand, within AO356_08585at 1934.343 kb on + strandat 1934.384 kb on - strandat 1934.472 kb on + strand, within AO356_08590at 1934.472 kb on + strand, within AO356_08590at 1934.472 kb on + strand, within AO356_08590at 1934.472 kb on + strand, within AO356_08590at 1934.472 kb on + strand, within AO356_08590at 1934.472 kb on + strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.473 kb on - strand, within AO356_08590at 1934.475 kb on - strand, within AO356_08590at 1934.690 kb on - strand, within AO356_08590at 1934.691 kb on + strand, within AO356_08590at 1934.691 kb on + strand, within AO356_08590at 1934.692 kb on - strand, within AO356_08590at 1934.692 kb on - strand, within AO356_08590at 1934.901 kb on - strand, within AO356_08590at 1934.901 kb on - strand, within AO356_08590

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,933,879 - +1.8
1,933,887 - +0.8
1,933,938 - AO356_08585 0.14 +2.3
1,933,952 + AO356_08585 0.17 +0.5
1,934,041 + AO356_08585 0.37 +2.3
1,934,047 + AO356_08585 0.38 +1.6
1,934,048 - AO356_08585 0.38 +0.9
1,934,238 + AO356_08585 0.81 -0.2
1,934,239 - AO356_08585 0.81 +2.2
1,934,239 - AO356_08585 0.81 +1.3
1,934,239 - AO356_08585 0.81 +0.5
1,934,243 - AO356_08585 0.82 +1.6
1,934,267 + AO356_08585 0.87 +2.3
1,934,268 - AO356_08585 0.87 +1.7
1,934,343 + -0.2
1,934,384 - -0.7
1,934,472 + AO356_08590 0.15 +1.5
1,934,472 + AO356_08590 0.15 +0.5
1,934,472 + AO356_08590 0.15 +2.3
1,934,472 + AO356_08590 0.15 +1.8
1,934,472 + AO356_08590 0.15 +2.1
1,934,472 + AO356_08590 0.15 +1.8
1,934,473 - AO356_08590 0.15 +0.7
1,934,473 - AO356_08590 0.15 +0.9
1,934,473 - AO356_08590 0.15 -0.4
1,934,473 - AO356_08590 0.15 +1.0
1,934,473 - AO356_08590 0.15 +0.0
1,934,473 - AO356_08590 0.15 +0.3
1,934,473 - AO356_08590 0.15 +2.0
1,934,473 - AO356_08590 0.15 +0.8
1,934,473 - AO356_08590 0.15 +1.3
1,934,473 - AO356_08590 0.15 +0.5
1,934,473 - AO356_08590 0.15 +1.8
1,934,473 - AO356_08590 0.15 +1.4
1,934,473 - AO356_08590 0.15 +0.1
1,934,473 - AO356_08590 0.15 +0.3
1,934,473 - AO356_08590 0.15 -0.7
1,934,473 - AO356_08590 0.15 +0.1
1,934,473 - AO356_08590 0.15 +1.2
1,934,473 - AO356_08590 0.15 +1.0
1,934,473 - AO356_08590 0.15 +1.4
1,934,473 - AO356_08590 0.15 +0.1
1,934,473 - AO356_08590 0.15 +0.6
1,934,475 - AO356_08590 0.15 +0.3
1,934,690 - AO356_08590 0.39 -0.8
1,934,691 + AO356_08590 0.39 +1.4
1,934,691 + AO356_08590 0.39 +1.2
1,934,692 - AO356_08590 0.39 +0.4
1,934,692 - AO356_08590 0.39 +1.1
1,934,901 - AO356_08590 0.63 -1.0
1,934,901 - AO356_08590 0.63 -0.8

Or see this region's nucleotide sequence