Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08445

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08440 and AO356_08445 are separated by 157 nucleotidesAO356_08445 and AO356_08450 are separated by 271 nucleotidesAO356_08450 and AO356_08455 overlap by 4 nucleotides AO356_08440: AO356_08440 - hypothetical protein, at 1,899,930 to 1,900,424 _08440 AO356_08445: AO356_08445 - TetR family transcriptional regulator, at 1,900,582 to 1,901,214 _08445 AO356_08450: AO356_08450 - urease accessory protein UreE, at 1,901,486 to 1,901,986 _08450 AO356_08455: AO356_08455 - urease accessory protein UreF, at 1,901,983 to 1,902,657 _08455 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -2 -1 0 1 2at 1899.618 kb on - strandat 1899.648 kb on - strandat 1899.648 kb on - strandat 1899.754 kb on - strandat 1899.760 kb on + strandat 1899.761 kb on - strandat 1899.837 kb on + strandat 1899.837 kb on + strandat 1899.873 kb on - strandat 1899.881 kb on + strandat 1899.881 kb on + strandat 1899.881 kb on + strandat 1899.882 kb on - strandat 1899.882 kb on - strandat 1899.905 kb on - strandat 1899.943 kb on + strandat 1899.943 kb on + strandat 1899.943 kb on + strandat 1899.943 kb on + strandat 1899.943 kb on + strandat 1899.943 kb on + strandat 1899.943 kb on + strandat 1899.943 kb on + strandat 1899.943 kb on + strandat 1899.943 kb on + strandat 1899.944 kb on - strandat 1899.944 kb on - strandat 1899.944 kb on - strandat 1900.010 kb on + strand, within AO356_08440at 1900.010 kb on + strand, within AO356_08440at 1900.011 kb on - strand, within AO356_08440at 1900.011 kb on - strand, within AO356_08440at 1900.107 kb on + strand, within AO356_08440at 1900.107 kb on + strand, within AO356_08440at 1900.107 kb on + strand, within AO356_08440at 1900.355 kb on + strand, within AO356_08440at 1900.355 kb on + strand, within AO356_08440at 1900.356 kb on - strand, within AO356_08440at 1900.356 kb on - strand, within AO356_08440at 1900.513 kb on - strandat 1900.542 kb on + strandat 1900.543 kb on - strandat 1900.543 kb on - strandat 1900.543 kb on - strandat 1900.726 kb on + strand, within AO356_08445at 1900.726 kb on + strand, within AO356_08445at 1900.727 kb on - strand, within AO356_08445at 1900.727 kb on - strand, within AO356_08445at 1900.811 kb on + strand, within AO356_08445at 1900.811 kb on + strand, within AO356_08445at 1900.812 kb on - strand, within AO356_08445at 1900.922 kb on - strand, within AO356_08445at 1901.148 kb on + strand, within AO356_08445at 1901.212 kb on + strandat 1901.225 kb on + strandat 1901.225 kb on + strandat 1901.225 kb on + strandat 1901.226 kb on - strandat 1901.372 kb on - strandat 1901.372 kb on - strandat 1901.372 kb on - strandat 1901.412 kb on + strandat 1901.412 kb on + strandat 1901.412 kb on + strandat 1901.412 kb on + strandat 1901.412 kb on + strandat 1901.412 kb on + strandat 1901.413 kb on - strandat 1901.413 kb on - strandat 1901.413 kb on - strandat 1901.413 kb on - strandat 1901.413 kb on - strandat 1901.419 kb on + strandat 1901.419 kb on + strandat 1901.451 kb on + strandat 1901.451 kb on + strandat 1901.452 kb on - strandat 1901.639 kb on + strand, within AO356_08450at 1901.639 kb on + strand, within AO356_08450at 1901.640 kb on - strand, within AO356_08450at 1901.819 kb on + strand, within AO356_08450at 1901.819 kb on + strand, within AO356_08450at 1901.819 kb on + strand, within AO356_08450at 1901.819 kb on + strand, within AO356_08450at 1901.819 kb on + strand, within AO356_08450at 1901.819 kb on + strand, within AO356_08450at 1901.820 kb on - strand, within AO356_08450at 1901.820 kb on - strand, within AO356_08450at 1901.820 kb on - strand, within AO356_08450at 1901.901 kb on - strand, within AO356_08450at 1901.901 kb on - strand, within AO356_08450at 1901.948 kb on + strandat 1901.948 kb on + strandat 1902.046 kb on + strandat 1902.046 kb on + strandat 1902.046 kb on + strandat 1902.046 kb on + strandat 1902.046 kb on + strandat 1902.046 kb on + strandat 1902.047 kb on - strandat 1902.047 kb on - strandat 1902.047 kb on - strandat 1902.047 kb on - strandat 1902.047 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,899,618 - +0.3
1,899,648 - -0.9
1,899,648 - +1.4
1,899,754 - +0.9
1,899,760 + +0.6
1,899,761 - -0.2
1,899,837 + +1.5
1,899,837 + -0.6
1,899,873 - +0.2
1,899,881 + -0.2
1,899,881 + +0.5
1,899,881 + -1.0
1,899,882 - +0.4
1,899,882 - -0.9
1,899,905 - +0.4
1,899,943 + +0.3
1,899,943 + -0.6
1,899,943 + +0.5
1,899,943 + -0.1
1,899,943 + +0.0
1,899,943 + +0.7
1,899,943 + +0.2
1,899,943 + +0.2
1,899,943 + -0.0
1,899,943 + +0.2
1,899,944 - +0.6
1,899,944 - -0.1
1,899,944 - +1.2
1,900,010 + AO356_08440 0.16 +1.4
1,900,010 + AO356_08440 0.16 +0.4
1,900,011 - AO356_08440 0.16 +0.0
1,900,011 - AO356_08440 0.16 -0.1
1,900,107 + AO356_08440 0.36 -2.3
1,900,107 + AO356_08440 0.36 +0.8
1,900,107 + AO356_08440 0.36 +0.7
1,900,355 + AO356_08440 0.86 -1.7
1,900,355 + AO356_08440 0.86 -0.5
1,900,356 - AO356_08440 0.86 +1.1
1,900,356 - AO356_08440 0.86 +1.8
1,900,513 - +0.0
1,900,542 + -1.1
1,900,543 - -0.7
1,900,543 - +1.1
1,900,543 - +0.3
1,900,726 + AO356_08445 0.23 +0.7
1,900,726 + AO356_08445 0.23 +1.1
1,900,727 - AO356_08445 0.23 +2.3
1,900,727 - AO356_08445 0.23 +0.7
1,900,811 + AO356_08445 0.36 +1.1
1,900,811 + AO356_08445 0.36 +0.4
1,900,812 - AO356_08445 0.36 +0.6
1,900,922 - AO356_08445 0.54 +0.9
1,901,148 + AO356_08445 0.89 +0.0
1,901,212 + -0.3
1,901,225 + +0.1
1,901,225 + -1.3
1,901,225 + +0.5
1,901,226 - +0.8
1,901,372 - +0.5
1,901,372 - -0.3
1,901,372 - +1.1
1,901,412 + -0.2
1,901,412 + -0.3
1,901,412 + +0.3
1,901,412 + -1.4
1,901,412 + -0.6
1,901,412 + +0.1
1,901,413 - +0.7
1,901,413 - -0.5
1,901,413 - -0.2
1,901,413 - -0.3
1,901,413 - -0.3
1,901,419 + +0.5
1,901,419 + +0.7
1,901,451 + -0.2
1,901,451 + +0.5
1,901,452 - -0.5
1,901,639 + AO356_08450 0.31 -0.7
1,901,639 + AO356_08450 0.31 -0.1
1,901,640 - AO356_08450 0.31 -0.1
1,901,819 + AO356_08450 0.66 -0.1
1,901,819 + AO356_08450 0.66 +0.4
1,901,819 + AO356_08450 0.66 +0.5
1,901,819 + AO356_08450 0.66 +0.4
1,901,819 + AO356_08450 0.66 -0.3
1,901,819 + AO356_08450 0.66 -0.9
1,901,820 - AO356_08450 0.67 +0.9
1,901,820 - AO356_08450 0.67 -0.0
1,901,820 - AO356_08450 0.67 +0.2
1,901,901 - AO356_08450 0.83 +0.3
1,901,901 - AO356_08450 0.83 +0.5
1,901,948 + +1.0
1,901,948 + -0.0
1,902,046 + -0.9
1,902,046 + +0.5
1,902,046 + -0.0
1,902,046 + -1.0
1,902,046 + +0.1
1,902,046 + +0.4
1,902,047 - +0.1
1,902,047 - +0.3
1,902,047 - -0.6
1,902,047 - +0.4
1,902,047 - -0.2

Or see this region's nucleotide sequence