Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08440 and AO356_08445 are separated by 157 nucleotides AO356_08445 and AO356_08450 are separated by 271 nucleotides AO356_08450 and AO356_08455 overlap by 4 nucleotides
AO356_08440: AO356_08440 - hypothetical protein, at 1,899,930 to 1,900,424
_08440
AO356_08445: AO356_08445 - TetR family transcriptional regulator, at 1,900,582 to 1,901,214
_08445
AO356_08450: AO356_08450 - urease accessory protein UreE, at 1,901,486 to 1,901,986
_08450
AO356_08455: AO356_08455 - urease accessory protein UreF, at 1,901,983 to 1,902,657
_08455
Position (kb)
1900
1901
1902 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1899.618 kb on - strand at 1899.648 kb on - strand at 1899.648 kb on - strand at 1899.754 kb on - strand at 1899.760 kb on + strand at 1899.761 kb on - strand at 1899.837 kb on + strand at 1899.837 kb on + strand at 1899.873 kb on - strand at 1899.881 kb on + strand at 1899.881 kb on + strand at 1899.881 kb on + strand at 1899.882 kb on - strand at 1899.882 kb on - strand at 1899.905 kb on - strand at 1899.943 kb on + strand at 1899.943 kb on + strand at 1899.943 kb on + strand at 1899.943 kb on + strand at 1899.943 kb on + strand at 1899.943 kb on + strand at 1899.943 kb on + strand at 1899.943 kb on + strand at 1899.943 kb on + strand at 1899.943 kb on + strand at 1899.944 kb on - strand at 1899.944 kb on - strand at 1899.944 kb on - strand at 1900.010 kb on + strand, within AO356_08440 at 1900.010 kb on + strand, within AO356_08440 at 1900.011 kb on - strand, within AO356_08440 at 1900.011 kb on - strand, within AO356_08440 at 1900.107 kb on + strand, within AO356_08440 at 1900.107 kb on + strand, within AO356_08440 at 1900.107 kb on + strand, within AO356_08440 at 1900.355 kb on + strand, within AO356_08440 at 1900.355 kb on + strand, within AO356_08440 at 1900.356 kb on - strand, within AO356_08440 at 1900.356 kb on - strand, within AO356_08440 at 1900.513 kb on - strand at 1900.542 kb on + strand at 1900.543 kb on - strand at 1900.543 kb on - strand at 1900.543 kb on - strand at 1900.726 kb on + strand, within AO356_08445 at 1900.726 kb on + strand, within AO356_08445 at 1900.727 kb on - strand, within AO356_08445 at 1900.727 kb on - strand, within AO356_08445 at 1900.811 kb on + strand, within AO356_08445 at 1900.811 kb on + strand, within AO356_08445 at 1900.812 kb on - strand, within AO356_08445 at 1900.922 kb on - strand, within AO356_08445 at 1901.148 kb on + strand, within AO356_08445 at 1901.212 kb on + strand at 1901.225 kb on + strand at 1901.225 kb on + strand at 1901.225 kb on + strand at 1901.226 kb on - strand at 1901.372 kb on - strand at 1901.372 kb on - strand at 1901.372 kb on - strand at 1901.412 kb on + strand at 1901.412 kb on + strand at 1901.412 kb on + strand at 1901.412 kb on + strand at 1901.412 kb on + strand at 1901.412 kb on + strand at 1901.413 kb on - strand at 1901.413 kb on - strand at 1901.413 kb on - strand at 1901.413 kb on - strand at 1901.413 kb on - strand at 1901.419 kb on + strand at 1901.419 kb on + strand at 1901.451 kb on + strand at 1901.451 kb on + strand at 1901.452 kb on - strand at 1901.639 kb on + strand, within AO356_08450 at 1901.639 kb on + strand, within AO356_08450 at 1901.640 kb on - strand, within AO356_08450 at 1901.819 kb on + strand, within AO356_08450 at 1901.819 kb on + strand, within AO356_08450 at 1901.819 kb on + strand, within AO356_08450 at 1901.819 kb on + strand, within AO356_08450 at 1901.819 kb on + strand, within AO356_08450 at 1901.819 kb on + strand, within AO356_08450 at 1901.820 kb on - strand, within AO356_08450 at 1901.820 kb on - strand, within AO356_08450 at 1901.820 kb on - strand, within AO356_08450 at 1901.901 kb on - strand, within AO356_08450 at 1901.901 kb on - strand, within AO356_08450 at 1901.948 kb on + strand at 1901.948 kb on + strand at 1902.046 kb on + strand at 1902.046 kb on + strand at 1902.046 kb on + strand at 1902.046 kb on + strand at 1902.046 kb on + strand at 1902.046 kb on + strand at 1902.047 kb on - strand at 1902.047 kb on - strand at 1902.047 kb on - strand at 1902.047 kb on - strand at 1902.047 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 1,899,618 - +0.3 1,899,648 - -0.9 1,899,648 - +1.4 1,899,754 - +0.9 1,899,760 + +0.6 1,899,761 - -0.2 1,899,837 + +1.5 1,899,837 + -0.6 1,899,873 - +0.2 1,899,881 + -0.2 1,899,881 + +0.5 1,899,881 + -1.0 1,899,882 - +0.4 1,899,882 - -0.9 1,899,905 - +0.4 1,899,943 + +0.3 1,899,943 + -0.6 1,899,943 + +0.5 1,899,943 + -0.1 1,899,943 + +0.0 1,899,943 + +0.7 1,899,943 + +0.2 1,899,943 + +0.2 1,899,943 + -0.0 1,899,943 + +0.2 1,899,944 - +0.6 1,899,944 - -0.1 1,899,944 - +1.2 1,900,010 + AO356_08440 0.16 +1.4 1,900,010 + AO356_08440 0.16 +0.4 1,900,011 - AO356_08440 0.16 +0.0 1,900,011 - AO356_08440 0.16 -0.1 1,900,107 + AO356_08440 0.36 -2.3 1,900,107 + AO356_08440 0.36 +0.8 1,900,107 + AO356_08440 0.36 +0.7 1,900,355 + AO356_08440 0.86 -1.7 1,900,355 + AO356_08440 0.86 -0.5 1,900,356 - AO356_08440 0.86 +1.1 1,900,356 - AO356_08440 0.86 +1.8 1,900,513 - +0.0 1,900,542 + -1.1 1,900,543 - -0.7 1,900,543 - +1.1 1,900,543 - +0.3 1,900,726 + AO356_08445 0.23 +0.7 1,900,726 + AO356_08445 0.23 +1.1 1,900,727 - AO356_08445 0.23 +2.3 1,900,727 - AO356_08445 0.23 +0.7 1,900,811 + AO356_08445 0.36 +1.1 1,900,811 + AO356_08445 0.36 +0.4 1,900,812 - AO356_08445 0.36 +0.6 1,900,922 - AO356_08445 0.54 +0.9 1,901,148 + AO356_08445 0.89 +0.0 1,901,212 + -0.3 1,901,225 + +0.1 1,901,225 + -1.3 1,901,225 + +0.5 1,901,226 - +0.8 1,901,372 - +0.5 1,901,372 - -0.3 1,901,372 - +1.1 1,901,412 + -0.2 1,901,412 + -0.3 1,901,412 + +0.3 1,901,412 + -1.4 1,901,412 + -0.6 1,901,412 + +0.1 1,901,413 - +0.7 1,901,413 - -0.5 1,901,413 - -0.2 1,901,413 - -0.3 1,901,413 - -0.3 1,901,419 + +0.5 1,901,419 + +0.7 1,901,451 + -0.2 1,901,451 + +0.5 1,901,452 - -0.5 1,901,639 + AO356_08450 0.31 -0.7 1,901,639 + AO356_08450 0.31 -0.1 1,901,640 - AO356_08450 0.31 -0.1 1,901,819 + AO356_08450 0.66 -0.1 1,901,819 + AO356_08450 0.66 +0.4 1,901,819 + AO356_08450 0.66 +0.5 1,901,819 + AO356_08450 0.66 +0.4 1,901,819 + AO356_08450 0.66 -0.3 1,901,819 + AO356_08450 0.66 -0.9 1,901,820 - AO356_08450 0.67 +0.9 1,901,820 - AO356_08450 0.67 -0.0 1,901,820 - AO356_08450 0.67 +0.2 1,901,901 - AO356_08450 0.83 +0.3 1,901,901 - AO356_08450 0.83 +0.5 1,901,948 + +1.0 1,901,948 + -0.0 1,902,046 + -0.9 1,902,046 + +0.5 1,902,046 + -0.0 1,902,046 + -1.0 1,902,046 + +0.1 1,902,046 + +0.4 1,902,047 - +0.1 1,902,047 - +0.3 1,902,047 - -0.6 1,902,047 - +0.4 1,902,047 - -0.2
Or see this region's nucleotide sequence