Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05830

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05825 and AO356_05830 are separated by 0 nucleotidesAO356_05830 and AO356_05835 overlap by 4 nucleotidesAO356_05835 and AO356_05840 overlap by 4 nucleotides AO356_05825: AO356_05825 - phage tail protein, at 1,291,857 to 1,293,803 _05825 AO356_05830: AO356_05830 - phage tail protein, at 1,293,804 to 1,294,439 _05830 AO356_05835: AO356_05835 - baseplate J protein, at 1,294,436 to 1,295,431 _05835 AO356_05840: AO356_05840 - phage baseplate protein, at 1,295,428 to 1,295,760 _05840 Position (kb) 1293 1294 1295Strain fitness (log2 ratio) -3 -2 -1 0 1at 1292.814 kb on + strand, within AO356_05825at 1292.814 kb on + strand, within AO356_05825at 1292.814 kb on + strand, within AO356_05825at 1292.814 kb on + strand, within AO356_05825at 1292.865 kb on - strand, within AO356_05825at 1292.875 kb on + strand, within AO356_05825at 1292.876 kb on - strand, within AO356_05825at 1292.879 kb on + strand, within AO356_05825at 1292.879 kb on + strand, within AO356_05825at 1292.899 kb on + strand, within AO356_05825at 1292.899 kb on + strand, within AO356_05825at 1292.899 kb on + strand, within AO356_05825at 1292.900 kb on - strand, within AO356_05825at 1292.900 kb on - strand, within AO356_05825at 1292.934 kb on + strand, within AO356_05825at 1292.945 kb on + strand, within AO356_05825at 1292.946 kb on - strand, within AO356_05825at 1292.946 kb on - strand, within AO356_05825at 1293.033 kb on + strand, within AO356_05825at 1293.042 kb on - strand, within AO356_05825at 1293.175 kb on + strand, within AO356_05825at 1293.175 kb on + strand, within AO356_05825at 1293.175 kb on + strand, within AO356_05825at 1293.175 kb on + strand, within AO356_05825at 1293.175 kb on + strand, within AO356_05825at 1293.176 kb on - strand, within AO356_05825at 1293.176 kb on - strand, within AO356_05825at 1293.176 kb on - strand, within AO356_05825at 1293.176 kb on - strand, within AO356_05825at 1293.176 kb on - strand, within AO356_05825at 1293.179 kb on + strand, within AO356_05825at 1293.179 kb on + strand, within AO356_05825at 1293.179 kb on + strand, within AO356_05825at 1293.179 kb on + strand, within AO356_05825at 1293.180 kb on - strand, within AO356_05825at 1293.180 kb on - strand, within AO356_05825at 1293.341 kb on - strand, within AO356_05825at 1293.341 kb on - strand, within AO356_05825at 1293.436 kb on + strand, within AO356_05825at 1293.436 kb on + strand, within AO356_05825at 1293.436 kb on + strand, within AO356_05825at 1293.437 kb on - strand, within AO356_05825at 1293.437 kb on - strand, within AO356_05825at 1293.491 kb on - strand, within AO356_05825at 1293.505 kb on + strand, within AO356_05825at 1293.506 kb on - strand, within AO356_05825at 1293.506 kb on - strand, within AO356_05825at 1293.547 kb on + strand, within AO356_05825at 1293.682 kb on + strandat 1293.682 kb on + strandat 1293.683 kb on - strandat 1293.683 kb on - strandat 1293.683 kb on - strandat 1293.790 kb on + strandat 1293.790 kb on + strandat 1293.790 kb on + strandat 1293.790 kb on + strandat 1293.791 kb on - strandat 1293.791 kb on - strandat 1293.791 kb on - strandat 1293.793 kb on + strandat 1293.794 kb on - strandat 1293.805 kb on + strandat 1293.806 kb on - strandat 1293.820 kb on + strandat 1293.824 kb on + strandat 1293.824 kb on + strandat 1293.824 kb on + strandat 1293.824 kb on + strandat 1293.825 kb on - strandat 1293.825 kb on - strandat 1293.845 kb on - strandat 1293.845 kb on - strandat 1294.051 kb on + strand, within AO356_05830at 1294.052 kb on - strand, within AO356_05830at 1294.283 kb on - strand, within AO356_05830at 1294.439 kb on + strandat 1294.440 kb on - strandat 1294.557 kb on + strand, within AO356_05835at 1294.557 kb on + strand, within AO356_05835at 1294.908 kb on + strand, within AO356_05835at 1294.908 kb on + strand, within AO356_05835at 1294.908 kb on + strand, within AO356_05835at 1294.973 kb on - strand, within AO356_05835at 1295.032 kb on - strand, within AO356_05835at 1295.032 kb on - strand, within AO356_05835at 1295.065 kb on - strand, within AO356_05835at 1295.065 kb on - strand, within AO356_05835at 1295.109 kb on - strand, within AO356_05835at 1295.202 kb on + strand, within AO356_05835at 1295.202 kb on + strand, within AO356_05835at 1295.202 kb on + strand, within AO356_05835at 1295.325 kb on + strand, within AO356_05835at 1295.326 kb on - strand, within AO356_05835

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,292,814 + AO356_05825 0.49 +0.8
1,292,814 + AO356_05825 0.49 -0.5
1,292,814 + AO356_05825 0.49 -0.8
1,292,814 + AO356_05825 0.49 +0.4
1,292,865 - AO356_05825 0.52 +0.3
1,292,875 + AO356_05825 0.52 -2.3
1,292,876 - AO356_05825 0.52 +0.3
1,292,879 + AO356_05825 0.52 -0.1
1,292,879 + AO356_05825 0.52 -0.8
1,292,899 + AO356_05825 0.54 +0.1
1,292,899 + AO356_05825 0.54 -0.2
1,292,899 + AO356_05825 0.54 +0.5
1,292,900 - AO356_05825 0.54 -0.7
1,292,900 - AO356_05825 0.54 -0.1
1,292,934 + AO356_05825 0.55 -0.4
1,292,945 + AO356_05825 0.56 +0.4
1,292,946 - AO356_05825 0.56 +1.4
1,292,946 - AO356_05825 0.56 -0.5
1,293,033 + AO356_05825 0.60 +0.4
1,293,042 - AO356_05825 0.61 -0.4
1,293,175 + AO356_05825 0.68 -0.0
1,293,175 + AO356_05825 0.68 +0.6
1,293,175 + AO356_05825 0.68 +0.4
1,293,175 + AO356_05825 0.68 +0.4
1,293,175 + AO356_05825 0.68 -0.7
1,293,176 - AO356_05825 0.68 -0.0
1,293,176 - AO356_05825 0.68 +0.2
1,293,176 - AO356_05825 0.68 -0.6
1,293,176 - AO356_05825 0.68 -0.2
1,293,176 - AO356_05825 0.68 -3.3
1,293,179 + AO356_05825 0.68 +0.4
1,293,179 + AO356_05825 0.68 +0.9
1,293,179 + AO356_05825 0.68 -0.2
1,293,179 + AO356_05825 0.68 +0.7
1,293,180 - AO356_05825 0.68 +0.2
1,293,180 - AO356_05825 0.68 +0.7
1,293,341 - AO356_05825 0.76 -0.5
1,293,341 - AO356_05825 0.76 -0.9
1,293,436 + AO356_05825 0.81 +0.8
1,293,436 + AO356_05825 0.81 -0.7
1,293,436 + AO356_05825 0.81 +0.5
1,293,437 - AO356_05825 0.81 +0.3
1,293,437 - AO356_05825 0.81 -0.3
1,293,491 - AO356_05825 0.84 +1.0
1,293,505 + AO356_05825 0.85 -0.7
1,293,506 - AO356_05825 0.85 +0.6
1,293,506 - AO356_05825 0.85 -0.0
1,293,547 + AO356_05825 0.87 +0.3
1,293,682 + +0.5
1,293,682 + -0.1
1,293,683 - -0.5
1,293,683 - +1.5
1,293,683 - +0.1
1,293,790 + -0.7
1,293,790 + +0.4
1,293,790 + -0.0
1,293,790 + -0.4
1,293,791 - -0.2
1,293,791 - -1.3
1,293,791 - +1.0
1,293,793 + +1.3
1,293,794 - +0.3
1,293,805 + -0.5
1,293,806 - +0.5
1,293,820 + -0.7
1,293,824 + +0.2
1,293,824 + +0.4
1,293,824 + +0.8
1,293,824 + -0.3
1,293,825 - +0.5
1,293,825 - -0.5
1,293,845 - -0.1
1,293,845 - -0.1
1,294,051 + AO356_05830 0.39 +0.5
1,294,052 - AO356_05830 0.39 -1.0
1,294,283 - AO356_05830 0.75 +0.0
1,294,439 + -0.8
1,294,440 - +0.8
1,294,557 + AO356_05835 0.12 +0.4
1,294,557 + AO356_05835 0.12 -0.1
1,294,908 + AO356_05835 0.47 -0.5
1,294,908 + AO356_05835 0.47 -0.5
1,294,908 + AO356_05835 0.47 +0.0
1,294,973 - AO356_05835 0.54 -0.5
1,295,032 - AO356_05835 0.60 -0.5
1,295,032 - AO356_05835 0.60 -0.0
1,295,065 - AO356_05835 0.63 -0.8
1,295,065 - AO356_05835 0.63 -1.2
1,295,109 - AO356_05835 0.68 +0.2
1,295,202 + AO356_05835 0.77 -0.3
1,295,202 + AO356_05835 0.77 +0.9
1,295,202 + AO356_05835 0.77 -0.9
1,295,325 + AO356_05835 0.89 +0.2
1,295,326 - AO356_05835 0.89 -0.2

Or see this region's nucleotide sequence