Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04520

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04510 and AO356_04515 are separated by 83 nucleotidesAO356_04515 and AO356_04520 are separated by 27 nucleotidesAO356_04520 and AO356_04525 are separated by 4 nucleotides AO356_04510: AO356_04510 - tRNA-Ser, at 1,019,721 to 1,019,810 _04510 AO356_04515: AO356_04515 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,019,894 to 1,020,607 _04515 AO356_04520: AO356_04520 - MBL fold metallo-hydrolase, at 1,020,635 to 1,021,393 _04520 AO356_04525: AO356_04525 - hypothetical protein, at 1,021,398 to 1,022,513 _04525 Position (kb) 1020 1021 1022Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1019.718 kb on + strandat 1019.875 kb on + strandat 1019.876 kb on - strandat 1019.896 kb on - strandat 1020.277 kb on + strand, within AO356_04515at 1020.326 kb on - strand, within AO356_04515at 1020.624 kb on + strandat 1020.624 kb on + strandat 1020.625 kb on - strandat 1020.625 kb on - strandat 1020.625 kb on - strandat 1020.625 kb on - strandat 1020.625 kb on - strandat 1020.625 kb on - strandat 1020.625 kb on - strandat 1020.629 kb on - strandat 1020.629 kb on - strandat 1020.874 kb on - strand, within AO356_04520at 1020.874 kb on - strand, within AO356_04520at 1020.880 kb on - strand, within AO356_04520at 1020.880 kb on - strand, within AO356_04520at 1020.880 kb on - strand, within AO356_04520at 1020.880 kb on - strand, within AO356_04520at 1020.970 kb on - strand, within AO356_04520at 1021.019 kb on + strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.020 kb on - strand, within AO356_04520at 1021.024 kb on - strand, within AO356_04520at 1021.024 kb on - strand, within AO356_04520at 1021.024 kb on - strand, within AO356_04520at 1021.024 kb on - strand, within AO356_04520at 1021.024 kb on - strand, within AO356_04520at 1021.024 kb on - strand, within AO356_04520at 1021.024 kb on - strand, within AO356_04520at 1021.024 kb on - strand, within AO356_04520at 1021.024 kb on - strand, within AO356_04520at 1021.165 kb on - strand, within AO356_04520at 1021.165 kb on - strand, within AO356_04520at 1021.179 kb on + strand, within AO356_04520at 1021.179 kb on + strand, within AO356_04520at 1021.180 kb on - strand, within AO356_04520at 1021.326 kb on + strandat 1021.326 kb on + strandat 1021.326 kb on + strandat 1021.326 kb on + strandat 1021.326 kb on + strandat 1021.327 kb on - strandat 1021.327 kb on - strandat 1021.327 kb on - strandat 1021.327 kb on - strandat 1021.327 kb on - strandat 1021.327 kb on - strandat 1021.330 kb on + strandat 1021.330 kb on + strandat 1021.330 kb on + strandat 1021.331 kb on - strandat 1021.331 kb on - strandat 1021.331 kb on - strandat 1021.331 kb on - strandat 1021.331 kb on - strandat 1021.331 kb on - strandat 1021.428 kb on + strandat 1021.428 kb on + strandat 1021.429 kb on - strandat 1021.429 kb on - strandat 1021.429 kb on - strandat 1021.633 kb on + strand, within AO356_04525at 1021.633 kb on + strand, within AO356_04525at 1021.633 kb on + strand, within AO356_04525at 1021.634 kb on - strand, within AO356_04525at 1021.634 kb on - strand, within AO356_04525at 1021.634 kb on - strand, within AO356_04525at 1021.634 kb on - strand, within AO356_04525at 1021.634 kb on - strand, within AO356_04525at 1021.634 kb on - strand, within AO356_04525at 1021.637 kb on - strand, within AO356_04525at 1021.637 kb on - strand, within AO356_04525at 1021.637 kb on - strand, within AO356_04525at 1021.637 kb on - strand, within AO356_04525at 1021.637 kb on - strand, within AO356_04525at 1021.637 kb on - strand, within AO356_04525at 1021.958 kb on - strand, within AO356_04525at 1021.958 kb on - strand, within AO356_04525at 1022.284 kb on + strand, within AO356_04525at 1022.284 kb on + strand, within AO356_04525at 1022.284 kb on + strand, within AO356_04525at 1022.285 kb on - strand, within AO356_04525at 1022.285 kb on - strand, within AO356_04525

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,019,718 + +0.2
1,019,875 + -0.2
1,019,876 - -0.0
1,019,896 - -1.3
1,020,277 + AO356_04515 0.54 -0.9
1,020,326 - AO356_04515 0.61 +1.9
1,020,624 + +1.1
1,020,624 + +0.3
1,020,625 - +0.1
1,020,625 - -0.5
1,020,625 - +0.9
1,020,625 - -0.0
1,020,625 - +0.2
1,020,625 - -0.4
1,020,625 - -0.1
1,020,629 - +0.0
1,020,629 - -0.7
1,020,874 - AO356_04520 0.31 -0.2
1,020,874 - AO356_04520 0.31 +0.1
1,020,880 - AO356_04520 0.32 +0.3
1,020,880 - AO356_04520 0.32 -0.7
1,020,880 - AO356_04520 0.32 -0.3
1,020,880 - AO356_04520 0.32 +0.3
1,020,970 - AO356_04520 0.44 +0.5
1,021,019 + AO356_04520 0.51 -0.4
1,021,020 - AO356_04520 0.51 -0.2
1,021,020 - AO356_04520 0.51 +0.6
1,021,020 - AO356_04520 0.51 +0.1
1,021,020 - AO356_04520 0.51 +0.5
1,021,020 - AO356_04520 0.51 -0.6
1,021,020 - AO356_04520 0.51 +0.0
1,021,020 - AO356_04520 0.51 +1.3
1,021,020 - AO356_04520 0.51 +0.5
1,021,020 - AO356_04520 0.51 +0.3
1,021,020 - AO356_04520 0.51 +0.3
1,021,024 - AO356_04520 0.51 +0.6
1,021,024 - AO356_04520 0.51 -0.6
1,021,024 - AO356_04520 0.51 +0.5
1,021,024 - AO356_04520 0.51 -1.0
1,021,024 - AO356_04520 0.51 +0.8
1,021,024 - AO356_04520 0.51 +0.7
1,021,024 - AO356_04520 0.51 +0.5
1,021,024 - AO356_04520 0.51 -0.2
1,021,024 - AO356_04520 0.51 +0.4
1,021,165 - AO356_04520 0.70 +0.5
1,021,165 - AO356_04520 0.70 +0.2
1,021,179 + AO356_04520 0.72 +0.1
1,021,179 + AO356_04520 0.72 -0.6
1,021,180 - AO356_04520 0.72 -0.3
1,021,326 + -0.0
1,021,326 + +0.4
1,021,326 + -0.1
1,021,326 + -0.3
1,021,326 + -0.2
1,021,327 - -0.3
1,021,327 - +0.5
1,021,327 - +0.2
1,021,327 - -0.4
1,021,327 - -0.6
1,021,327 - +1.1
1,021,330 + -0.8
1,021,330 + -1.4
1,021,330 + +0.9
1,021,331 - +0.3
1,021,331 - -0.3
1,021,331 - -0.1
1,021,331 - +0.5
1,021,331 - +1.5
1,021,331 - +0.0
1,021,428 + -0.2
1,021,428 + +0.7
1,021,429 - -0.6
1,021,429 - -1.4
1,021,429 - +0.5
1,021,633 + AO356_04525 0.21 +0.3
1,021,633 + AO356_04525 0.21 -0.8
1,021,633 + AO356_04525 0.21 -0.3
1,021,634 - AO356_04525 0.21 +0.3
1,021,634 - AO356_04525 0.21 +0.7
1,021,634 - AO356_04525 0.21 -2.5
1,021,634 - AO356_04525 0.21 +0.2
1,021,634 - AO356_04525 0.21 -1.1
1,021,634 - AO356_04525 0.21 -0.4
1,021,637 - AO356_04525 0.21 -0.3
1,021,637 - AO356_04525 0.21 +0.9
1,021,637 - AO356_04525 0.21 -1.4
1,021,637 - AO356_04525 0.21 -2.3
1,021,637 - AO356_04525 0.21 -2.9
1,021,637 - AO356_04525 0.21 -0.0
1,021,958 - AO356_04525 0.50 +0.2
1,021,958 - AO356_04525 0.50 -1.0
1,022,284 + AO356_04525 0.79 +0.4
1,022,284 + AO356_04525 0.79 +0.7
1,022,284 + AO356_04525 0.79 -0.6
1,022,285 - AO356_04525 0.79 +0.1
1,022,285 - AO356_04525 0.79 +0.1

Or see this region's nucleotide sequence