Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01275

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01270 and AO356_01275 are separated by 182 nucleotidesAO356_01275 and AO356_01280 are separated by 112 nucleotidesAO356_01280 and AO356_01285 are separated by 135 nucleotides AO356_01270: AO356_01270 - (Fe-S)-binding protein, at 295,284 to 296,696 _01270 AO356_01275: AO356_01275 - GntR family transcriptional regulator, at 296,879 to 298,306 _01275 AO356_01280: AO356_01280 - hypothetical protein, at 298,419 to 298,841 _01280 AO356_01285: AO356_01285 - oxidoreductase, at 298,977 to 299,723 _01285 Position (kb) 296 297 298 299Strain fitness (log2 ratio) -2 -1 0 1 2at 295.888 kb on + strand, within AO356_01270at 295.963 kb on - strand, within AO356_01270at 296.013 kb on + strand, within AO356_01270at 296.013 kb on + strand, within AO356_01270at 296.013 kb on + strand, within AO356_01270at 296.014 kb on - strand, within AO356_01270at 296.072 kb on + strand, within AO356_01270at 296.218 kb on - strand, within AO356_01270at 296.239 kb on - strand, within AO356_01270at 296.239 kb on - strand, within AO356_01270at 296.239 kb on - strand, within AO356_01270at 296.239 kb on - strand, within AO356_01270at 296.301 kb on + strand, within AO356_01270at 296.302 kb on - strand, within AO356_01270at 296.433 kb on + strand, within AO356_01270at 296.433 kb on + strand, within AO356_01270at 296.434 kb on - strand, within AO356_01270at 296.434 kb on - strand, within AO356_01270at 296.434 kb on - strand, within AO356_01270at 296.475 kb on + strand, within AO356_01270at 296.475 kb on + strand, within AO356_01270at 296.652 kb on + strandat 296.652 kb on + strandat 296.653 kb on - strandat 296.702 kb on + strandat 296.702 kb on + strandat 296.702 kb on + strandat 296.703 kb on - strandat 296.775 kb on + strandat 296.775 kb on + strandat 296.985 kb on - strandat 296.985 kb on - strandat 296.985 kb on - strandat 297.017 kb on + strandat 297.017 kb on + strandat 297.017 kb on + strandat 297.017 kb on + strandat 297.018 kb on - strandat 297.020 kb on + strandat 297.020 kb on + strandat 297.021 kb on - strandat 297.021 kb on - strandat 297.356 kb on + strand, within AO356_01275at 297.356 kb on + strand, within AO356_01275at 297.356 kb on + strand, within AO356_01275at 297.488 kb on + strand, within AO356_01275at 297.488 kb on + strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.560 kb on - strand, within AO356_01275at 297.573 kb on + strand, within AO356_01275at 297.740 kb on + strand, within AO356_01275at 297.944 kb on + strand, within AO356_01275at 298.038 kb on - strand, within AO356_01275at 298.218 kb on - strandat 298.218 kb on - strandat 298.239 kb on + strandat 298.239 kb on + strandat 298.330 kb on + strandat 298.330 kb on + strandat 298.331 kb on - strandat 298.333 kb on + strandat 298.333 kb on + strandat 298.333 kb on + strandat 298.333 kb on + strandat 298.333 kb on + strandat 298.334 kb on - strandat 298.334 kb on - strandat 298.353 kb on + strandat 298.353 kb on + strandat 298.353 kb on + strandat 298.353 kb on + strandat 298.354 kb on - strandat 298.358 kb on + strandat 298.359 kb on - strandat 298.401 kb on + strandat 298.401 kb on + strandat 298.401 kb on + strandat 298.402 kb on - strandat 298.402 kb on - strandat 298.406 kb on + strandat 298.426 kb on - strandat 298.486 kb on + strand, within AO356_01280at 298.486 kb on + strand, within AO356_01280at 298.486 kb on + strand, within AO356_01280at 298.486 kb on + strand, within AO356_01280at 298.487 kb on - strand, within AO356_01280at 298.487 kb on - strand, within AO356_01280at 298.487 kb on - strand, within AO356_01280at 298.490 kb on - strand, within AO356_01280at 298.490 kb on - strand, within AO356_01280at 298.512 kb on + strand, within AO356_01280at 298.512 kb on + strand, within AO356_01280at 298.512 kb on + strand, within AO356_01280at 298.513 kb on - strand, within AO356_01280at 298.513 kb on - strand, within AO356_01280at 298.513 kb on - strand, within AO356_01280at 298.524 kb on - strand, within AO356_01280at 298.524 kb on - strand, within AO356_01280at 298.530 kb on + strand, within AO356_01280at 298.530 kb on + strand, within AO356_01280at 298.530 kb on + strand, within AO356_01280at 298.530 kb on + strand, within AO356_01280at 298.531 kb on - strand, within AO356_01280at 298.531 kb on - strand, within AO356_01280at 298.531 kb on - strand, within AO356_01280at 298.531 kb on - strand, within AO356_01280at 298.542 kb on + strand, within AO356_01280at 298.558 kb on + strand, within AO356_01280at 298.558 kb on + strand, within AO356_01280at 298.597 kb on + strand, within AO356_01280at 298.597 kb on + strand, within AO356_01280at 298.598 kb on - strand, within AO356_01280at 298.598 kb on - strand, within AO356_01280at 298.658 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.661 kb on + strand, within AO356_01280at 298.662 kb on - strand, within AO356_01280at 298.672 kb on + strand, within AO356_01280at 298.672 kb on + strand, within AO356_01280at 298.673 kb on - strand, within AO356_01280at 298.770 kb on - strand, within AO356_01280at 298.808 kb on - strandat 298.824 kb on + strandat 298.824 kb on + strandat 298.824 kb on + strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.878 kb on - strandat 298.909 kb on + strandat 299.045 kb on + strandat 299.046 kb on - strandat 299.152 kb on + strand, within AO356_01285at 299.152 kb on + strand, within AO356_01285at 299.152 kb on + strand, within AO356_01285at 299.153 kb on - strand, within AO356_01285at 299.153 kb on - strand, within AO356_01285at 299.153 kb on - strand, within AO356_01285at 299.158 kb on + strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.263 kb on + strand, within AO356_01285at 299.264 kb on - strand, within AO356_01285

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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295,888 + AO356_01270 0.43 +0.3
295,963 - AO356_01270 0.48 +1.0
296,013 + AO356_01270 0.52 +0.6
296,013 + AO356_01270 0.52 +0.9
296,013 + AO356_01270 0.52 +0.4
296,014 - AO356_01270 0.52 -0.8
296,072 + AO356_01270 0.56 -0.2
296,218 - AO356_01270 0.66 +0.8
296,239 - AO356_01270 0.68 +0.1
296,239 - AO356_01270 0.68 +1.0
296,239 - AO356_01270 0.68 +0.8
296,239 - AO356_01270 0.68 -0.0
296,301 + AO356_01270 0.72 +0.5
296,302 - AO356_01270 0.72 -0.6
296,433 + AO356_01270 0.81 +0.9
296,433 + AO356_01270 0.81 +1.4
296,434 - AO356_01270 0.81 +0.9
296,434 - AO356_01270 0.81 +1.0
296,434 - AO356_01270 0.81 +0.6
296,475 + AO356_01270 0.84 +1.2
296,475 + AO356_01270 0.84 +0.2
296,652 + +2.2
296,652 + +1.0
296,653 - +0.4
296,702 + -0.1
296,702 + -0.1
296,702 + +0.3
296,703 - +0.3
296,775 + +0.6
296,775 + +0.1
296,985 - +1.1
296,985 - +0.4
296,985 - +0.2
297,017 + +1.9
297,017 + +1.0
297,017 + +0.5
297,017 + +0.9
297,018 - +0.2
297,020 + +1.2
297,020 + +1.1
297,021 - +0.5
297,021 - +0.2
297,356 + AO356_01275 0.33 +0.2
297,356 + AO356_01275 0.33 +0.3
297,356 + AO356_01275 0.33 +0.3
297,488 + AO356_01275 0.43 +2.1
297,488 + AO356_01275 0.43 +0.4
297,489 - AO356_01275 0.43 +0.7
297,489 - AO356_01275 0.43 +0.7
297,489 - AO356_01275 0.43 +0.6
297,489 - AO356_01275 0.43 +1.2
297,489 - AO356_01275 0.43 +0.7
297,489 - AO356_01275 0.43 -0.2
297,560 - AO356_01275 0.48 +0.3
297,573 + AO356_01275 0.49 +1.7
297,740 + AO356_01275 0.60 +1.0
297,944 + AO356_01275 0.75 +1.1
298,038 - AO356_01275 0.81 +0.4
298,218 - +1.4
298,218 - +0.6
298,239 + +0.3
298,239 + +0.5
298,330 + +0.7
298,330 + -0.3
298,331 - -0.2
298,333 + +1.0
298,333 + +0.4
298,333 + +0.2
298,333 + +0.1
298,333 + -0.2
298,334 - +0.8
298,334 - +0.9
298,353 + +1.3
298,353 + +0.8
298,353 + -0.4
298,353 + -0.9
298,354 - +0.3
298,358 + +0.3
298,359 - -0.1
298,401 + +0.2
298,401 + -0.6
298,401 + -0.4
298,402 - -0.1
298,402 - +0.5
298,406 + +0.9
298,426 - +0.3
298,486 + AO356_01280 0.16 +0.3
298,486 + AO356_01280 0.16 +0.7
298,486 + AO356_01280 0.16 -1.9
298,486 + AO356_01280 0.16 -0.1
298,487 - AO356_01280 0.16 -0.1
298,487 - AO356_01280 0.16 -0.1
298,487 - AO356_01280 0.16 -0.2
298,490 - AO356_01280 0.17 +0.2
298,490 - AO356_01280 0.17 +0.1
298,512 + AO356_01280 0.22 +0.1
298,512 + AO356_01280 0.22 +0.7
298,512 + AO356_01280 0.22 -0.6
298,513 - AO356_01280 0.22 -0.3
298,513 - AO356_01280 0.22 +0.2
298,513 - AO356_01280 0.22 +0.3
298,524 - AO356_01280 0.25 -0.4
298,524 - AO356_01280 0.25 -0.1
298,530 + AO356_01280 0.26 -1.5
298,530 + AO356_01280 0.26 +0.5
298,530 + AO356_01280 0.26 +0.3
298,530 + AO356_01280 0.26 -0.7
298,531 - AO356_01280 0.26 +1.4
298,531 - AO356_01280 0.26 +0.5
298,531 - AO356_01280 0.26 -0.5
298,531 - AO356_01280 0.26 +1.3
298,542 + AO356_01280 0.29 -0.2
298,558 + AO356_01280 0.33 -0.4
298,558 + AO356_01280 0.33 +1.0
298,597 + AO356_01280 0.42 -0.7
298,597 + AO356_01280 0.42 -0.1
298,598 - AO356_01280 0.42 +0.1
298,598 - AO356_01280 0.42 -0.4
298,658 + AO356_01280 0.57 +1.2
298,661 + AO356_01280 0.57 -1.2
298,661 + AO356_01280 0.57 -0.1
298,661 + AO356_01280 0.57 +1.2
298,661 + AO356_01280 0.57 +0.1
298,661 + AO356_01280 0.57 +0.6
298,662 - AO356_01280 0.57 +0.3
298,672 + AO356_01280 0.60 +0.2
298,672 + AO356_01280 0.60 +0.1
298,673 - AO356_01280 0.60 -0.4
298,770 - AO356_01280 0.83 +1.8
298,808 - +0.5
298,824 + +0.3
298,824 + -0.3
298,824 + +0.2
298,825 - +1.1
298,825 - +0.4
298,825 - -0.3
298,825 - -2.0
298,825 - +0.4
298,878 - +0.8
298,909 + +0.7
299,045 + +0.1
299,046 - +0.4
299,152 + AO356_01285 0.23 +0.8
299,152 + AO356_01285 0.23 +0.7
299,152 + AO356_01285 0.23 -0.4
299,153 - AO356_01285 0.24 -0.4
299,153 - AO356_01285 0.24 -0.1
299,153 - AO356_01285 0.24 -0.3
299,158 + AO356_01285 0.24 -0.6
299,159 - AO356_01285 0.24 +0.3
299,159 - AO356_01285 0.24 +0.5
299,159 - AO356_01285 0.24 +1.0
299,159 - AO356_01285 0.24 -0.2
299,159 - AO356_01285 0.24 -0.4
299,263 + AO356_01285 0.38 -1.4
299,264 - AO356_01285 0.38 +1.1

Or see this region's nucleotide sequence