Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23215 and ABZR87_RS23220 are separated by 42 nucleotides ABZR87_RS23220 and ABZR87_RS23225 are separated by 6 nucleotides
ABZR87_RS23215: ABZR87_RS23215 - D-xylose ABC transporter substrate-binding protein, at 1,570,711 to 1,571,721
_RS23215
ABZR87_RS23220: ABZR87_RS23220 - xylose ABC transporter ATP-binding protein, at 1,571,764 to 1,573,311
_RS23220
ABZR87_RS23225: ABZR87_RS23225 - sugar ABC transporter permease, at 1,573,318 to 1,574,520
_RS23225
Position (kb)
1571
1572
1573
1574 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1570.856 kb on - strand, within ABZR87_RS23215 at 1571.053 kb on + strand, within ABZR87_RS23215 at 1571.089 kb on + strand, within ABZR87_RS23215 at 1571.164 kb on + strand, within ABZR87_RS23215 at 1571.164 kb on + strand, within ABZR87_RS23215 at 1571.164 kb on + strand, within ABZR87_RS23215 at 1571.164 kb on + strand, within ABZR87_RS23215 at 1571.165 kb on - strand, within ABZR87_RS23215 at 1571.165 kb on - strand, within ABZR87_RS23215 at 1571.242 kb on + strand, within ABZR87_RS23215 at 1571.509 kb on + strand, within ABZR87_RS23215 at 1571.509 kb on + strand, within ABZR87_RS23215 at 1571.509 kb on + strand, within ABZR87_RS23215 at 1571.510 kb on - strand, within ABZR87_RS23215 at 1571.510 kb on - strand, within ABZR87_RS23215 at 1571.692 kb on + strand at 1571.692 kb on + strand at 1571.692 kb on + strand at 1571.692 kb on + strand at 1571.692 kb on + strand at 1571.693 kb on - strand at 1571.693 kb on - strand at 1571.693 kb on - strand at 1571.694 kb on + strand at 1571.695 kb on - strand at 1571.695 kb on - strand at 1571.695 kb on - strand at 1571.719 kb on + strand at 1571.719 kb on + strand at 1571.719 kb on + strand at 1571.720 kb on - strand at 1571.746 kb on - strand at 1571.746 kb on - strand at 1571.746 kb on - strand at 1571.752 kb on + strand at 1571.773 kb on - strand at 1571.932 kb on + strand, within ABZR87_RS23220 at 1571.933 kb on - strand, within ABZR87_RS23220 at 1571.933 kb on - strand, within ABZR87_RS23220 at 1572.121 kb on + strand, within ABZR87_RS23220 at 1572.122 kb on - strand, within ABZR87_RS23220 at 1572.197 kb on + strand, within ABZR87_RS23220 at 1572.198 kb on - strand, within ABZR87_RS23220 at 1572.205 kb on + strand, within ABZR87_RS23220 at 1572.206 kb on - strand, within ABZR87_RS23220 at 1572.367 kb on + strand, within ABZR87_RS23220 at 1572.367 kb on + strand, within ABZR87_RS23220 at 1572.367 kb on + strand, within ABZR87_RS23220 at 1572.368 kb on - strand, within ABZR87_RS23220 at 1573.099 kb on + strand, within ABZR87_RS23220 at 1573.108 kb on + strand, within ABZR87_RS23220 at 1573.108 kb on + strand, within ABZR87_RS23220 at 1573.108 kb on + strand, within ABZR87_RS23220 at 1573.108 kb on + strand, within ABZR87_RS23220 at 1573.108 kb on + strand, within ABZR87_RS23220 at 1573.108 kb on + strand, within ABZR87_RS23220 at 1573.109 kb on - strand, within ABZR87_RS23220 at 1573.109 kb on - strand, within ABZR87_RS23220 at 1573.109 kb on - strand, within ABZR87_RS23220 at 1573.109 kb on - strand, within ABZR87_RS23220 at 1573.109 kb on - strand, within ABZR87_RS23220 at 1573.414 kb on + strand at 1573.465 kb on + strand, within ABZR87_RS23225 at 1573.465 kb on + strand, within ABZR87_RS23225 at 1573.466 kb on - strand, within ABZR87_RS23225 at 1574.104 kb on + strand, within ABZR87_RS23225 at 1574.104 kb on + strand, within ABZR87_RS23225 at 1574.104 kb on + strand, within ABZR87_RS23225 at 1574.104 kb on + strand, within ABZR87_RS23225 at 1574.140 kb on + strand, within ABZR87_RS23225 at 1574.140 kb on + strand, within ABZR87_RS23225 at 1574.140 kb on + strand, within ABZR87_RS23225 at 1574.140 kb on + strand, within ABZR87_RS23225
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,570,856 - ABZR87_RS23215 0.14 -0.4 1,571,053 + ABZR87_RS23215 0.34 -1.4 1,571,089 + ABZR87_RS23215 0.37 -2.7 1,571,164 + ABZR87_RS23215 0.45 -1.3 1,571,164 + ABZR87_RS23215 0.45 -1.0 1,571,164 + ABZR87_RS23215 0.45 -2.3 1,571,164 + ABZR87_RS23215 0.45 -0.8 1,571,165 - ABZR87_RS23215 0.45 -1.8 1,571,165 - ABZR87_RS23215 0.45 -1.5 1,571,242 + ABZR87_RS23215 0.53 -1.1 1,571,509 + ABZR87_RS23215 0.79 -2.5 1,571,509 + ABZR87_RS23215 0.79 -2.2 1,571,509 + ABZR87_RS23215 0.79 -0.9 1,571,510 - ABZR87_RS23215 0.79 -3.0 1,571,510 - ABZR87_RS23215 0.79 -1.3 1,571,692 + -2.6 1,571,692 + -1.8 1,571,692 + -2.4 1,571,692 + -3.9 1,571,692 + -2.6 1,571,693 - -2.7 1,571,693 - -2.5 1,571,693 - -0.6 1,571,694 + -3.1 1,571,695 - -2.6 1,571,695 - -1.9 1,571,695 - -1.0 1,571,719 + -1.4 1,571,719 + -0.4 1,571,719 + -0.8 1,571,720 - +0.4 1,571,746 - -1.3 1,571,746 - -2.1 1,571,746 - -1.2 1,571,752 + +0.2 1,571,773 - -0.1 1,571,932 + ABZR87_RS23220 0.11 -2.2 1,571,933 - ABZR87_RS23220 0.11 -1.1 1,571,933 - ABZR87_RS23220 0.11 -2.5 1,572,121 + ABZR87_RS23220 0.23 -2.0 1,572,122 - ABZR87_RS23220 0.23 -3.2 1,572,197 + ABZR87_RS23220 0.28 -1.3 1,572,198 - ABZR87_RS23220 0.28 -1.1 1,572,205 + ABZR87_RS23220 0.28 -0.1 1,572,206 - ABZR87_RS23220 0.29 -1.3 1,572,367 + ABZR87_RS23220 0.39 -1.9 1,572,367 + ABZR87_RS23220 0.39 -3.0 1,572,367 + ABZR87_RS23220 0.39 -1.0 1,572,368 - ABZR87_RS23220 0.39 -3.3 1,573,099 + ABZR87_RS23220 0.86 -3.4 1,573,108 + ABZR87_RS23220 0.87 -2.4 1,573,108 + ABZR87_RS23220 0.87 -2.4 1,573,108 + ABZR87_RS23220 0.87 -3.3 1,573,108 + ABZR87_RS23220 0.87 -2.7 1,573,108 + ABZR87_RS23220 0.87 -2.6 1,573,108 + ABZR87_RS23220 0.87 -2.9 1,573,109 - ABZR87_RS23220 0.87 -2.5 1,573,109 - ABZR87_RS23220 0.87 -1.6 1,573,109 - ABZR87_RS23220 0.87 -3.3 1,573,109 - ABZR87_RS23220 0.87 -2.7 1,573,109 - ABZR87_RS23220 0.87 -0.8 1,573,414 + +0.4 1,573,465 + ABZR87_RS23225 0.12 -2.1 1,573,465 + ABZR87_RS23225 0.12 -1.4 1,573,466 - ABZR87_RS23225 0.12 -2.7 1,574,104 + ABZR87_RS23225 0.65 -1.4 1,574,104 + ABZR87_RS23225 0.65 -2.4 1,574,104 + ABZR87_RS23225 0.65 -1.8 1,574,104 + ABZR87_RS23225 0.65 -1.2 1,574,140 + ABZR87_RS23225 0.68 -2.8 1,574,140 + ABZR87_RS23225 0.68 -0.6 1,574,140 + ABZR87_RS23225 0.68 -2.8 1,574,140 + ABZR87_RS23225 0.68 -1.6
Or see this region's nucleotide sequence