Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14750

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14740 and ABZR87_RS14745 are separated by 48 nucleotidesABZR87_RS14745 and ABZR87_RS14750 are separated by 79 nucleotidesABZR87_RS14750 and ABZR87_RS14755 are separated by 102 nucleotidesABZR87_RS14755 and ABZR87_RS14760 are separated by 141 nucleotides ABZR87_RS14740: ABZR87_RS14740 - HupE/UreJ family protein, at 3,112,718 to 3,113,335 _RS14740 ABZR87_RS14745: ABZR87_RS14745 - urease subunit gamma, at 3,113,384 to 3,113,686 _RS14745 ABZR87_RS14750: ABZR87_RS14750 - urease accessory protein UreD, at 3,113,766 to 3,114,653 _RS14750 ABZR87_RS14755: ABZR87_RS14755 - urea ABC transporter ATP-binding subunit UrtE, at 3,114,756 to 3,115,448 _RS14755 ABZR87_RS14760: ABZR87_RS14760 - urea ABC transporter ATP-binding protein UrtD, at 3,115,590 to 3,116,441 _RS14760 Position (kb) 3113 3114 3115Strain fitness (log2 ratio) -2 -1 0 1at 3112.873 kb on - strand, within ABZR87_RS14740at 3113.284 kb on + strandat 3113.284 kb on + strandat 3113.285 kb on - strandat 3113.285 kb on - strandat 3113.285 kb on - strandat 3113.347 kb on + strandat 3113.511 kb on + strand, within ABZR87_RS14745at 3113.771 kb on + strandat 3113.771 kb on + strandat 3113.772 kb on - strandat 3113.772 kb on - strandat 3113.956 kb on + strand, within ABZR87_RS14750at 3113.956 kb on + strand, within ABZR87_RS14750at 3114.361 kb on + strand, within ABZR87_RS14750at 3114.361 kb on + strand, within ABZR87_RS14750at 3114.362 kb on - strand, within ABZR87_RS14750at 3114.691 kb on + strandat 3114.692 kb on - strandat 3114.692 kb on - strandat 3114.794 kb on + strandat 3114.795 kb on - strandat 3114.795 kb on - strandat 3114.844 kb on + strand, within ABZR87_RS14755at 3114.874 kb on + strand, within ABZR87_RS14755at 3114.878 kb on - strand, within ABZR87_RS14755at 3115.105 kb on + strand, within ABZR87_RS14755at 3115.105 kb on + strand, within ABZR87_RS14755at 3115.105 kb on + strand, within ABZR87_RS14755at 3115.106 kb on - strand, within ABZR87_RS14755at 3115.210 kb on + strand, within ABZR87_RS14755at 3115.211 kb on - strand, within ABZR87_RS14755at 3115.211 kb on - strand, within ABZR87_RS14755at 3115.211 kb on - strand, within ABZR87_RS14755at 3115.211 kb on - strand, within ABZR87_RS14755at 3115.211 kb on - strand, within ABZR87_RS14755at 3115.238 kb on - strand, within ABZR87_RS14755at 3115.389 kb on - strandat 3115.418 kb on - strandat 3115.420 kb on + strandat 3115.421 kb on - strandat 3115.489 kb on + strandat 3115.527 kb on + strandat 3115.528 kb on - strandat 3115.573 kb on + strandat 3115.591 kb on + strandat 3115.592 kb on - strandat 3115.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,112,873 - ABZR87_RS14740 0.25 -2.6
3,113,284 + -0.1
3,113,284 + -0.1
3,113,285 - -0.4
3,113,285 - -1.0
3,113,285 - -0.1
3,113,347 + +0.2
3,113,511 + ABZR87_RS14745 0.42 -0.9
3,113,771 + +0.3
3,113,771 + +0.4
3,113,772 - -2.0
3,113,772 - +0.2
3,113,956 + ABZR87_RS14750 0.21 -0.4
3,113,956 + ABZR87_RS14750 0.21 -0.5
3,114,361 + ABZR87_RS14750 0.67 +0.1
3,114,361 + ABZR87_RS14750 0.67 -0.4
3,114,362 - ABZR87_RS14750 0.67 -0.1
3,114,691 + +0.4
3,114,692 - -0.1
3,114,692 - -0.2
3,114,794 + +1.1
3,114,795 - -1.0
3,114,795 - -0.3
3,114,844 + ABZR87_RS14755 0.13 +1.5
3,114,874 + ABZR87_RS14755 0.17 +0.8
3,114,878 - ABZR87_RS14755 0.18 +0.0
3,115,105 + ABZR87_RS14755 0.50 -0.3
3,115,105 + ABZR87_RS14755 0.50 +0.2
3,115,105 + ABZR87_RS14755 0.50 +0.1
3,115,106 - ABZR87_RS14755 0.51 -0.2
3,115,210 + ABZR87_RS14755 0.66 +0.6
3,115,211 - ABZR87_RS14755 0.66 +0.2
3,115,211 - ABZR87_RS14755 0.66 -0.3
3,115,211 - ABZR87_RS14755 0.66 +0.9
3,115,211 - ABZR87_RS14755 0.66 -0.0
3,115,211 - ABZR87_RS14755 0.66 +0.3
3,115,238 - ABZR87_RS14755 0.70 -0.2
3,115,389 - +0.8
3,115,418 - +1.0
3,115,420 + +0.0
3,115,421 - -0.7
3,115,489 + -0.0
3,115,527 + -0.1
3,115,528 - +0.4
3,115,573 + -1.7
3,115,591 + +0.8
3,115,592 - -0.1
3,115,592 - +0.8

Or see this region's nucleotide sequence